myRT

myRT report for GCA_004843725.1_ASM484372v1

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Seq: CP039451.1 Psychroserpens sp. NJDZ02 chromosome, complete genome (4319537 bp)
Overview 1 RT 1: 35044-45770 bp 2 RT 2: 956771-962208 bp 3 RT 3: 1220364-1226923 bp 4 RT 4: 2321207-2328842 bp 5 RT 5: 2714806-2720242 bp 6 RT 6: 3081552-3093218 bp 7 RT 7: 3514603-3519593 bp Neighborhood of RT #1 [35044, 45886] CYK3 RVT-GII GIIM DUF1887 RVT-GII GIIM InsE Neighborhood of RT #2 [956771, 962208] RVT-GII GIIM Neighborhood of RT #3 [1220364, 1226923] dcm RVT-GII GIIM DUF2806 Neighborhood of RT #4 [2321207, 2328856] RVT-UG5 nitrilase cNMP_binding ribB Neighborhood of RT #5 [2714806, 2720253] RVT-GII GIIM P-type_ATPase-Cd_Zn_Co_like DUF3703 Neighborhood of RT #6 [3081552, 3093218] DUF3883 COG0610 RVT-Retrons Neighborhood of RT #7 [3514603, 3519593] RVT-GII GIIM Feature: gene Location: 35044-36003 bp Ori: QCE39917.1 Feature: domain Description: CYK3 Location: 35215-35695 bp Feature: domain Description: CYK3 Location: 3521 5-35695 bp Feature: gene Location: 36214-36834 bp Feature: gene Location: 36923-38203 bp Ori: QCE39919.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37118-37733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 1 8-37733 bp Feature: domain Description: GIIM Note: maturase Location: 37805-38018 bp Feature: domain Description: GIIM Note: maturase Location: 37805-3801 8 bp Feature: gene Location: 38832-39617 bp Feature: gene Location: 40497-41939 bp Ori: QCE39921.1 Feature: domain Description: DUF1887 Location: 41529-41667 bp Feature: domain Description: DUF1 887 Location: 41 529-41 667 bp Feature: gene Location: 42042-43322 bp Ori: QCE39922.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42237-42852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42237-42852 bp Feature: domain Description: GIIM Note: maturase Location: 42924-43137 bp Feature: domain Description: GIIM Note: maturase Location: 42924-431 37 bp Feature: gene Location: 43949-44734 bp Feature: gene Location: 45515-45886 bp Ori: QCE39924.1 Feature: domain Description: InsE Location: 45539-45770 bp Feature: domain Description: InsE Location: 45539-45770 bp Feature: gene Location: 956771-957097 bp Feature: gene Location: 957094-957603 bp Feature: gene Location: 957696-958976 bp Ori: QCE40670.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957891-958506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957891 -958506 bp Feature: domain Description: GIIM Note: maturase Location: 958578-958791 bp Feature: domain Description: GIIM Note: maturase Location: 958578-958791 bp Feature: gene Location: 960013-960534 bp Feature: gene Location: 961258-962208 bp Feature: gene Location: 1220364-1221767 bp Ori: QCE40891.1 Feature: domain Description: dcm Location: 1220376-1221603 bp Feature: domain Description: dcm Location: 1 220376-1 221 603 bp Feature: gene Location: 1221966-1222961 bp Feature: gene Location: 1223053-1224333 bp Ori: QCE40893.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1223248-1223863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 223248-1 223863 bp Feature: domain Description: GIIM Note: maturase Location: 1223935-1224148 bp Feature: domain Description: GIIM Note: maturase Location: 1 223935-1 2241 48 bp Feature: gene Location: 1224972-1225970 bp Ori: QCE40894.1 Feature: domain Description: DUF2806 Location: 1225230-1225854 bp Feature: domain Description: DUF2806 Location: 1 225230-1 225854 bp Feature: gene Location: 1226411-1226923 bp Feature: gene Location: 2321207-2321461 bp Feature: gene Location: 2322832-2323629 bp Feature: gene Location: 2323969-2327289 bp Ori: QCE41728.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2324524-2325061 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2324524-2325061 bp Feature: domain Description: nitrilase Location: 2326534-2327191 bp Feature: domain Description: nitrilase Location: 2326534-23271 91 bp Feature: gene Location: 2327618-2328193 bp Ori: QCE41729.1 Feature: domain Description: cNMP_binding Location: 2327726-2327972 bp Feature: domain Description: cNMP_binding Location: 2327726-2327972 bp Feature: gene Location: 2328194-2328856 bp Ori: QCE41730.1 Gene: ribB Feature: domain Description: ribB Location: 2328236-2328842 bp Feature: domain Description: ribB Location: 2328236-2328842 bp Feature: gene Location: 2714806-2715006 bp Feature: gene Location: 2715113-2715676 bp Feature: gene Location: 2716387-2717667 bp Ori: QCE42074.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2716582-2717197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 6582-271 71 97 bp Feature: domain Description: GIIM Note: maturase Location: 2717269-2717482 bp Feature: domain Description: GIIM Note: maturase Location: 271 7269-271 7482 bp Feature: gene Location: 2717942-2719894 bp Ori: QCE42075.1 Gene: cadA Feature: domain Description: P-type_ATPase-Cd_Zn_Co_like Location: 2718056-2719880 bp Feature: domain Description: P-type_ATPase-Cd_Zn_Co_like Location: 271 8056-271 9880 bp Feature: gene Location: 2719891-2720253 bp Ori: QCE42076.1 Feature: domain Description: DUF3703 Location: 2719924-2720242 bp Feature: domain Description: DUF3703 Location: 271 9924-2720242 bp Feature: gene Location: 3081552-3086405 bp Ori: QCE42392.1 Feature: domain Description: DUF3883 Location: 3086025-3086295 bp Feature: domain Description: DUF3883 Location: 3086025-3086295 bp Feature: gene Location: 3086406-3089696 bp Ori: QCE42393.1 Feature: domain Description: COG0610 Location: 3086469-3089580 bp Feature: domain Description: COG061 0 Location: 3086469-3089580 bp Feature: gene Location: 3090072-3091241 bp Ori: QCE42394.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3090270-3090873 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3090270-3090873 bp Feature: gene Location: 3091252-3092592 bp Feature: gene Location: 3092589-3093218 bp Feature: gene Location: 3514603-3515499 bp Feature: gene Location: 3516172-3516888 bp Feature: gene Location: 3517540-3518820 bp Ori: QCE42767.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3517735-3518350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 7735-351 8350 bp Feature: domain Description: GIIM Note: maturase Location: 3518422-3518635 bp Feature: domain Description: GIIM Note: maturase Location: 351 8422-351 8635 bp Feature: gene Location: 3518918-3519379 bp Feature: gene Location: 3519390-3519593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CYK3 (COG5279), RVT-GII, GIIM (pfam08388), DUF1887 (pfam09002), InsE (COG2963), dcm (TIGR00675), DUF2806 (pfam10987), RVT-UG5, nitrilase (cl11424), cNMP_binding (pfam00027)
ribB (TIGR00506), P-type_ATPase-Cd_Zn_Co_like (cd07548), DUF3703 (pfam12487), DUF3883 (pfam13020), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-Retrons