myRT

myRT report for GCA_004919445.1_ASM491944v1

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Seq: CP039605.1 Salmonella enterica subsp. enterica strain 12C0807994 plasmid p12-6919.2, complete sequence (38556 bp)
Overview 1 RT 1: 5750-9224 bp Neighborhood of RT #1 [5750, 9241] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 5750-6058 bp Feature: domain Description: Rep_3 Location: 5756-6020 bp Feature: domain Description: Rep_3 Location: 5756-6020 bp Feature: gene Location: 6068-6765 bp Feature: domain Description: Zn_Tnp_IS1 Location: 6074-6176 bp Feature: domain Description: Zn_Tnp_IS1 Location: 6074-61 76 bp Feature: domain Description: HTH_Tnp_IS1 Location: 6197-6329 bp Feature: domain Description: HTH_Tnp_IS1 Location: 61 97-6329 bp Feature: gene Location: 6917-8401 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7319-8009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731 9-8009 bp Feature: gene Location: 8401-8652 bp Feature: gene Location: 8810-9241 bp Ori: QCG54771.1 Gene: umuD Feature: domain Description: PRK10276 Location: 8861-9224 bp Feature: domain Description: PRK1 0276 Location: 8861 -9224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP039603.1 Salmonella enterica subsp. enterica strain 12C0807994 chromosome, complete genome (4819943 bp)
Overview 1 RT 1: 4012019-4018373 bp Neighborhood of RT #1 [4012019, 4018378] PRK09692 RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 4012019-4013239 bp Feature: domain Description: PRK09692 Location: 4012028-4013177 bp Feature: domain Description: PRK09692 Location: 4012 02 8-4013177 bp Feature: gene Location: 4013564-4014526 bp Feature: gene Location: 4014592-4015461 bp Ori: QCG54622.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4014637-4015222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4014637-40152 2 2 bp Feature: gene Location: 4016263-4017450 bp Ori: QCG53793.1 Feature: domain Description: PRK10473 Location: 4016266-4017442 bp Feature: domain Description: PRK10473 Location: 40162 66-4017442 bp Feature: gene Location: 4017419-4018378 bp Ori: QCG53794.1 Gene: yidZ Feature: domain Description: PRK10216 Location: 4017422-4018373 bp Feature: domain Description: PRK102 16 Location: 401742 2 -4018373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)