myRT

myRT report for GCA_004919535.1_ASM491953v1

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Seq: CP039631.1 Pseudomonas veronii strain Pvy chromosome, complete genome (7106237 bp)
Overview 1 RT 1: 858258-861309 bp 2 RT 2: 2354249-2360873 bp 3 RT 3: 2456247-2460799 bp 4 RT 4: 3220147-3224174 bp 5 RT 5: 3441342-3445063 bp 6 RT 6: 4105938-4109822 bp 7 RT 7: 4128284-4131673 bp 8 RT 8: 6531897-6535694 bp Neighborhood of RT #1 [858258, 861309] QslA_E PHA02517 RVT-GII GIIM Neighborhood of RT #2 [2354249, 2360873] PRK10770 LptD RVT_N RVT-GII GIIM Neighborhood of RT #3 [2456247, 2460828] RVT_N RVT-GII TIGR00244 ribD Neighborhood of RT #4 [3220147, 3224174] RVT-Retrons ABC_ATPase Neighborhood of RT #5 [3441342, 3445086] RVT-GII GIIM ccoP Neighborhood of RT #6 [4105938, 4109822] RVT-DGRs Neighborhood of RT #7 [4128284, 4132154] RVT_N RVT-GII HNH tig clpP Neighborhood of RT #8 [6531897, 6535694] PRK11453 Tra5 RVT-GII GIIM Feature: gene Location: 858258-858464 bp Ori: QCG68676.1 Feature: domain Description: QslA_E Location: 858261-858414 bp Feature: domain Description: QslA_E Location: 858261 -85841 4 bp Feature: gene Location: 858565-859040 bp Feature: domain Description: PHA02517 Location: 858571-858865 bp Feature: domain Description: PHA0251 7 Location: 858571 -858865 bp Feature: gene Location: 859121-860644 bp Ori: QCG64832.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859394-860126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859394-8601 26 bp Feature: domain Description: GIIM Note: maturase Location: 860201-860426 bp Feature: domain Description: GIIM Note: maturase Location: 860201 -860426 bp Feature: gene Location: 860559-861024 bp Feature: gene Location: 860939-861309 bp Feature: gene Location: 2354249-2355589 bp Ori: QCG65710.1 Feature: domain Description: PRK10770 Location: 2354333-2355539 bp Feature: domain Description: PRK1 0770 Location: 2354333-2355539 bp Feature: gene Location: 2355564-2358341 bp Ori: QCG65711.1 Feature: domain Description: LptD Location: 2355903-2358324 bp Feature: domain Description: LptD Location: 2355903-2358324 bp Feature: gene Location: 2358471-2360197 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2358528-2358771 bp Feature: domain Description: RVT_N Location: 2358528-2358771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2358816-2359452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235881 6-2359452 bp Feature: domain Description: GIIM Note: maturase Location: 2359503-2359737 bp Feature: domain Description: GIIM Note: maturase Location: 2359503-2359737 bp Feature: gene Location: 2360310-2360537 bp Feature: gene Location: 2360573-2360873 bp Feature: gene Location: 2456247-2456369 bp Feature: gene Location: 2457031-2457336 bp Feature: gene Location: 2457433-2459138 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2457490-2457727 bp Feature: domain Description: RVT_N Location: 2457490-2457727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457778-2458159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457778-24581 59 bp Feature: gene Location: 2459231-2459711 bp Gene: nrdR Feature: domain Description: TIGR00244 Location: 2459234-2459465 bp Feature: domain Description: TIGR00244 Location: 2459234-2459465 bp Feature: gene Location: 2459692-2460828 bp Ori: QCG65781.1 Gene: ribD Feature: domain Description: ribD Location: 2459728-2460799 bp Feature: domain Description: ribD Location: 2459728-2460799 bp Feature: gene Location: 3220147-3220326 bp Feature: gene Location: 3220338-3220565 bp Feature: gene Location: 3221757-3222711 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3221871-3222210 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3221 871 -322221 0 bp Feature: gene Location: 3222716-3223579 bp Ori: QCG66267.1 Feature: domain Description: ABC_ATPase Location: 3222785-3223496 bp Feature: domain Description: ABC_ATPase Location: 3222785-3223496 bp Feature: gene Location: 3223557-3224174 bp Feature: gene Location: 3441342-3441712 bp Feature: gene Location: 3441627-3442092 bp Feature: gene Location: 3442007-3443530 bp Ori: QCG66414.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3442280-3443012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3442280-344301 2 bp Feature: domain Description: GIIM Note: maturase Location: 3443087-3443312 bp Feature: domain Description: GIIM Note: maturase Location: 3443087-344331 2 bp Feature: gene Location: 3443607-3444062 bp Feature: gene Location: 3444109-3445086 bp Ori: QCG66415.1 Gene: ccoP Feature: domain Description: ccoP Location: 3444211-3445063 bp Feature: domain Description: ccoP Location: 344421 1 -3445063 bp Feature: gene Location: 4105938-4106399 bp Feature: gene Location: 4106459-4108310 bp Feature: gene Location: 4108353-4109348 bp Ori: QCG66836.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4108440-4109196 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 08440-41 091 96 bp Feature: gene Location: 4109455-4109553 bp Feature: gene Location: 4109619-4109822 bp Feature: gene Location: 4128284-4129987 bp Gene: ltrA Feature: domain Description: RVT_N Location: 4128341-4128584 bp Feature: domain Description: RVT_N Location: 41 28341 -41 28584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4128629-4129085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 28629-41 29085 bp Feature: domain Description: HNH Note: nucleases Location: 4129802-4129940 bp Feature: domain Description: HNH Note: nucleases Location: 41 29802-41 29940 bp Feature: gene Location: 4130117-4131427 bp Ori: QCG66857.1 Feature: domain Description: tig Location: 4130120-4131398 bp Feature: domain Description: tig Location: 41 301 20-41 31 398 bp Feature: gene Location: 4131520-4132154 bp Gene: clpP Feature: domain Description: clpP Location: 4131577-4131673 bp Feature: domain Description: clpP Location: 41 31 577-41 31 673 bp Feature: gene Location: 6531897-6532766 bp Ori: QCG68267.1 Feature: domain Description: PRK11453 Location: 6531900-6532713 bp Feature: domain Description: PRK1 1 453 Location: 6531 900-653271 3 bp Feature: gene Location: 6532801-6533376 bp Ori: QCG68268.1 Feature: domain Description: Tra5 Location: 6532807-6533221 bp Feature: domain Description: Tra5 Location: 6532807-6533221 bp Feature: gene Location: 6533505-6535028 bp Ori: QCG68269.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6533778-6534510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6533778-653451 0 bp Feature: domain Description: GIIM Note: maturase Location: 6534588-6534810 bp Feature: domain Description: GIIM Note: maturase Location: 6534588-653481 0 bp Feature: gene Location: 6534943-6535408 bp Feature: gene Location: 6535353-6535694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QslA_E (pfam18226), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786), RVT-Retrons
ABC_ATPase (pfam09818), ccoP (TIGR00782), RVT-DGRs, HNH (pfam01844), tig (TIGR00115), clpP, PRK11453 (O-acetylserine/cysteine exporter), Tra5 (COG2801)