myRT

myRT report for GCA_004919535.4_ASM491953v4

Download annotations/find similar RTs

Seq: CP039631.3 Pseudomonas veronii strain Pvy chromosome, complete genome (7110596 bp)
Overview 1 RT 1: 858786-863464 bp 2 RT 2: 2355710-2364640 bp 3 RT 3: 2456673-2462332 bp 4 RT 4: 3222138-3226903 bp 5 RT 5: 3440865-3447169 bp 6 RT 6: 4108410-4114015 bp 7 RT 7: 4130781-4134647 bp 8 RT 8: 6535856-6541704 bp Neighborhood of RT #1 [858786, 863464] QslA_E PHA02517 RVT-GII GIIM HTH_Tnp_1 PHA02517 Neighborhood of RT #2 [2355710, 2364669] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [2456673, 2462361] Nnt1 YbaY RVT_N RVT-GII YkfC HNH TIGR00244 ribD Neighborhood of RT #4 [3222138, 3226938] RVT-Retrons ABC_ATPase TnpB_IS66 Neighborhood of RT #5 [3440865, 3447192] ccoG_rdxA_fixG InsE RVT-GII GIIM PHA02517 ccoP Neighborhood of RT #6 [4108410, 4114080] Dcm Dcm RVT-DGRs InsE PHA02517 DUF1654 Neighborhood of RT #7 [4130781, 4134655] RVT_N RVT-GII GIIM HNH tig clpP Neighborhood of RT #8 [6535856, 6541718] PRK11453 Tra5 RVT-GII GIIM InsE LGT_LGT_LGT_TIGR03299 Feature: gene Location: 858786-859079 bp Ori: QCG68676.2 Feature: domain Description: QslA_E Location: 858822-859029 bp Feature: domain Description: QslA_E Location: 858822-859029 bp Feature: gene Location: 859093-859569 bp Feature: domain Description: PHA02517 Location: 859099-859558 bp Feature: domain Description: PHA0251 7 Location: 859099-859558 bp Feature: gene Location: 859650-861161 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859908-860643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859908-860643 bp Feature: domain Description: GIIM Note: maturase Location: 860718-860943 bp Feature: domain Description: GIIM Note: maturase Location: 86071 8-860943 bp Feature: gene Location: 861836-862519 bp Feature: domain Description: HTH_Tnp_1 Location: 861845-862046 bp Feature: domain Description: HTH_Tnp_1 Location: 861 845-862046 bp Feature: domain Description: PHA02517 Location: 862178-862520 bp Feature: domain Description: PHA0251 7 Location: 8621 78-862520 bp Feature: gene Location: 863132-863464 bp Feature: gene Location: 2355710-2357050 bp Ori: QCG65710.1 Feature: domain Description: PRK10770 Location: 2355794-2357000 bp Feature: domain Description: PRK1 0770 Location: 2355794-2357000 bp Feature: gene Location: 2357025-2359802 bp Ori: QIM56562.1 Feature: domain Description: LptD Location: 2357364-2359785 bp Feature: domain Description: LptD Location: 2357364-2359785 bp Feature: gene Location: 2359977-2361665 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2360034-2360277 bp Feature: domain Description: RVT_N Location: 2360034-2360277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2360322-2360958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2360322-2360958 bp Feature: domain Description: GIIM Note: maturase Location: 2361009-2361243 bp Feature: domain Description: GIIM Note: maturase Location: 2361 009-2361 243 bp Feature: domain Description: HNH Note: nucleases Location: 2361498-2361639 bp Feature: domain Description: HNH Note: nucleases Location: 2361 498-2361 639 bp Feature: gene Location: 2362973-2363998 bp Ori: QGH43778.1 Feature: domain Description: COG3178 Location: 2362988-2363990 bp Feature: domain Description: COG31 78 Location: 2362988-2363990 bp Feature: gene Location: 2363995-2364669 bp Ori: QCG65713.1 Feature: domain Description: NTP_transferase_like_1 Location: 2364001-2364640 bp Feature: domain Description: NTP_transferase_like_1 Location: 2364001 -2364640 bp Feature: gene Location: 2456673-2457326 bp Ori: QCG65778.1 Feature: domain Description: Nnt1 Location: 2456736-2457144 bp Feature: domain Description: Nnt1 Location: 2456736-24571 44 bp Feature: gene Location: 2457323-2457778 bp Ori: QCG65779.1 Feature: domain Description: YbaY Location: 2457350-2457773 bp Feature: domain Description: YbaY Location: 2457350-2457773 bp Feature: gene Location: 2458963-2460669 bp Ori: QGH43801.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2459020-2459257 bp Feature: domain Description: RVT_N Location: 2459020-2459257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2459308-2459944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2459308-2459944 bp Feature: domain Description: YkfC Location: 2460076-2460247 bp Feature: domain Description: YkfC Location: 2460076-2460247 bp Feature: domain Description: HNH Note: nucleases Location: 2460481-2460619 bp Feature: domain Description: HNH Note: nucleases Location: 2460481 -246061 9 bp Feature: gene Location: 2460762-2461244 bp Ori: QGH44869.2 Gene: nrdR Feature: domain Description: TIGR00244 Location: 2460765-2461206 bp Feature: domain Description: TIGR00244 Location: 2460765-2461 206 bp Feature: gene Location: 2461225-2462361 bp Ori: QCG65781.1 Gene: ribD Feature: domain Description: ribD Location: 2461261-2462332 bp Feature: domain Description: ribD Location: 2461 261 -2462332 bp Feature: gene Location: 3222138-3222317 bp Feature: gene Location: 3222329-3222556 bp Feature: gene Location: 3223749-3224705 bp Ori: QGH43981.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3223863-3224430 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3223863-3224430 bp Feature: gene Location: 3224710-3226170 bp Ori: QGH43982.1 Feature: domain Description: ABC_ATPase Location: 3224779-3225490 bp Feature: domain Description: ABC_ATPase Location: 3224779-3225490 bp Feature: gene Location: 3226582-3226938 bp Ori: QCG68740.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 3226609-3226903 bp Feature: domain Description: TnpB_IS66 Location: 3226609-3226903 bp Feature: gene Location: 3440865-3442280 bp Ori: QCG66413.1 Gene: ccoG Feature: domain Description: ccoG_rdxA_fixG Location: 3440982-3442263 bp Feature: domain Description: ccoG_rdxA_fixG Location: 3440982-3442263 bp Feature: gene Location: 3442671-3443452 bp Feature: domain Description: InsE Location: 3442689-3442962 bp Feature: domain Description: InsE Location: 3442689-3442962 bp Feature: gene Location: 3444126-3445634 bp Ori: QCG66414.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444384-3445116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444384-34451 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 3445191-3445416 bp Feature: domain Description: GIIM Note: maturase Location: 34451 91 -344541 6 bp Feature: gene Location: 3445749-3446168 bp Feature: domain Description: PHA02517 Location: 3445752-3446154 bp Feature: domain Description: PHA0251 7 Location: 3445752-34461 54 bp Feature: gene Location: 3446215-3447192 bp Ori: QCG66415.1 Gene: ccoP Feature: domain Description: ccoP Location: 3446317-3447169 bp Feature: domain Description: ccoP Location: 344631 7-34471 69 bp Feature: gene Location: 4108410-4108871 bp Feature: gene Location: 4108931-4110787 bp Ori: QGH44182.1 Feature: domain Description: Dcm Location: 4109015-4109594 bp Feature: domain Description: Dcm Location: 41 0901 5-41 09594 bp Feature: domain Description: Dcm Location: 4110311-4110743 bp Feature: domain Description: Dcm Location: 41 1 031 1 -41 1 0743 bp Feature: gene Location: 4110830-4111987 bp Ori: QCG66836.2 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4111079-4111763 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 1 1 079-41 1 1 763 bp Feature: gene Location: 4112509-4113690 bp Ori: QGH44183.1 Feature: domain Description: InsE Location: 4112512-4112782 bp Feature: domain Description: InsE Location: 41 1 251 2-41 1 2782 bp Feature: domain Description: PHA02517 Location: 4112872-4113652 bp Feature: domain Description: PHA0251 7 Location: 41 1 2872-41 1 3652 bp Feature: gene Location: 4113844-4114080 bp Ori: QCG66838.1 Feature: domain Description: DUF1654 Location: 4113847-4114015 bp Feature: domain Description: DUF1 654 Location: 41 1 3847-41 1 401 5 bp Feature: gene Location: 4130781-4132487 bp Ori: QGH44186.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4130838-4131081 bp Feature: domain Description: RVT_N Location: 41 30838-41 31 081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4131126-4131765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 31 1 26-41 31 765 bp Feature: domain Description: GIIM Note: maturase Location: 4131816-4132050 bp Feature: domain Description: GIIM Note: maturase Location: 41 31 81 6-41 32050 bp Feature: domain Description: HNH Note: nucleases Location: 4132302-4132440 bp Feature: domain Description: HNH Note: nucleases Location: 41 32302-41 32440 bp Feature: gene Location: 4132617-4133927 bp Ori: QCG66857.1 Gene: tig Feature: domain Description: tig Location: 4132620-4133898 bp Feature: domain Description: tig Location: 41 32620-41 33898 bp Feature: gene Location: 4134020-4134655 bp Ori: QGH44187.1 Gene: clpP Feature: domain Description: clpP Location: 4134074-4134647 bp Feature: domain Description: clpP Location: 41 34074-41 34647 bp Feature: gene Location: 6535856-6536725 bp Ori: QCG68267.1 Feature: domain Description: PRK11453 Location: 6535859-6536672 bp Feature: domain Description: PRK1 1 453 Location: 6535859-6536672 bp Feature: gene Location: 6536760-6537335 bp Ori: QCG68268.1 Feature: domain Description: Tra5 Location: 6536766-6537180 bp Feature: domain Description: Tra5 Location: 6536766-65371 80 bp Feature: gene Location: 6537464-6538972 bp Ori: QCG68269.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6537722-6538454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6537722-6538454 bp Feature: domain Description: GIIM Note: maturase Location: 6538532-6538754 bp Feature: domain Description: GIIM Note: maturase Location: 6538532-6538754 bp Feature: gene Location: 6539649-6540331 bp Feature: domain Description: InsE Location: 6539658-6539940 bp Feature: domain Description: InsE Location: 6539658-6539940 bp Feature: gene Location: 6540783-6541718 bp Ori: QCG68271.1 Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 6540792-6541704 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 6540792-6541 704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QslA_E (pfam18226), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )
NTP_transferase_like_1 (cd06422), Nnt1 (COG3897), YbaY (COG3126), YkfC (COG3344), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786), RVT-Retrons, ABC_ATPase (pfam09818), TnpB_IS66 (pfam05717), ccoG_rdxA_fixG (TIGR02745)
InsE (COG2963), ccoP (TIGR00782), Dcm (COG0270), RVT-DGRs, DUF1654 (pfam07867), tig (TIGR00115), clpP, PRK11453 (O-acetylserine/cysteine exporter), Tra5 (COG2801), LGT_LGT_LGT_TIGR03299