myRT

myRT report for GCA_005121165.1_ASM512116v1

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Seq: CP034413.1 Oscillospiraceae bacterium J115 chromosome, complete genome (3576111 bp)
Overview 1 RT 1: 859460-865237 bp 2 RT 2: 992299-996958 bp 3 RT 3: 1020101-1028723 bp 4 RT 4: 1558573-1564216 bp 5 RT 5: 2415025-2427627 bp 6 RT 6: 2440233-2446107 bp 7 RT 7: 3462972-3468457 bp Neighborhood of RT #1 [859460, 865237] Big_3 Big_3 RVT-DGRs Neighborhood of RT #2 [992299, 996958] Maff2 RVT-GII Intron_maturas2 HNHc VirD4 Neighborhood of RT #3 [1020101, 1028842] DEDD_Tnp_IS110 HHH_5 Transposase_20 Spr RVT-GII TraC-F-type Neighborhood of RT #4 [1558573, 1564216] Big_3 Big_3 Big_3 Big_3 RVT-DGRs ChiA1_BD ChiA1_BD Neighborhood of RT #5 [2415025, 2427641] DUF3848 DUF3849 KOG1000 RVT-GII HNHc TTRAP Neighborhood of RT #6 [2440233, 2446208] Maff2 RVT-GII HNHc Maff2 VirD4 VirD4 Neighborhood of RT #7 [3462972, 3468457] SCAD_SBCAD fixB rubredoxin IscR RVT-Retrons Phage_int_SAM_1 INT_C_like_2 Feature: gene Location: 859460-859846 bp Feature: gene Location: 859839-862568 bp Ori: QCI58577.1 Feature: domain Description: Big_3 Location: 859926-860127 bp Feature: domain Description: Big_3 Location: 859926-8601 27 bp Feature: domain Description: Big_3 Location: 860160-860355 bp Feature: domain Description: Big_3 Location: 8601 60-860355 bp Feature: gene Location: 863030-864205 bp Ori: QCI58578.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 863273-863831 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 863273-863831 bp Feature: gene Location: 864221-864598 bp Feature: gene Location: 864782-865237 bp Feature: gene Location: 992299-992439 bp Ori: QCI58676.1 Feature: domain Description: Maff2 Location: 992302-992428 bp Feature: domain Description: Maff2 Location: 992302-992428 bp Feature: gene Location: 992535-992849 bp Feature: gene Location: 992969-994768 bp Ori: QCI58677.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993236-994052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993236-994052 bp Feature: domain Description: Intron_maturas2 Location: 994130-994427 bp Feature: domain Description: Intron_maturas2 Location: 9941 30-994427 bp Feature: domain Description: HNHc Note: nucleases Location: 994589-994748 bp Feature: domain Description: HNHc Note: nucleases Location: 994589-994748 bp Feature: gene Location: 995344-996687 bp Feature: domain Description: VirD4 Location: 995482-996685 bp Feature: domain Description: VirD4 Location: 995482-996685 bp Feature: gene Location: 996767-996958 bp Feature: gene Location: 1020101-1021327 bp Ori: QCI60962.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 1020119-1020599 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 0201 1 9-1 020599 bp Feature: domain Description: HHH_5 Location: 1020653-1020728 bp Feature: domain Description: HHH_5 Location: 1 020653-1 020728 bp Feature: domain Description: Transposase_20 Location: 1020947-1021199 bp Feature: domain Description: Transposase_20 Location: 1 020947-1 021 1 99 bp Feature: gene Location: 1021679-1022089 bp Ori: QCI58698.1 Feature: domain Description: Spr Location: 1021715-1021916 bp Feature: domain Description: Spr Location: 1 021 71 5-1 021 91 6 bp Feature: gene Location: 1022252-1024135 bp Ori: QCI58699.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022570-1023272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 022570-1 023272 bp Feature: gene Location: 1024817-1026502 bp Feature: gene Location: 1026509-1028842 bp Ori: QCI58701.1 Feature: domain Description: TraC-F-type Location: 1026938-1028723 bp Feature: domain Description: TraC-F-type Location: 1 026938-1 028723 bp Feature: gene Location: 1558573-1561092 bp Ori: QCI59220.1 Feature: domain Description: Big_3 Location: 1559431-1559557 bp Feature: domain Description: Big_3 Location: 1 559431 -1 559557 bp Feature: domain Description: Big_3 Location: 1559617-1559824 bp Feature: domain Description: Big_3 Location: 1 55961 7-1 559824 bp Feature: domain Description: Big_3 Location: 1559857-1560061 bp Feature: domain Description: Big_3 Location: 1 559857-1 560061 bp Feature: domain Description: Big_3 Location: 1560100-1560301 bp Feature: domain Description: Big_3 Location: 1 5601 00-1 560301 bp Feature: gene Location: 1561179-1561637 bp Feature: gene Location: 1562034-1563191 bp Ori: QCI59222.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1562307-1562970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 562307-1 562970 bp Feature: gene Location: 1563176-1563811 bp Ori: QCI59223.1 Feature: domain Description: ChiA1_BD Location: 1563491-1563620 bp Feature: domain Description: ChiA1 _BD Location: 1 563491 -1 563620 bp Feature: domain Description: ChiA1_BD Location: 1563680-1563758 bp Feature: domain Description: ChiA1 _BD Location: 1 563680-1 563758 bp Feature: gene Location: 1563815-1564216 bp Feature: gene Location: 2415025-2415843 bp Ori: QCI59927.1 Feature: domain Description: DUF3848 Location: 2415043-2415322 bp Feature: domain Description: DUF3848 Location: 241 5043-241 5322 bp Feature: domain Description: DUF3849 Location: 2415358-2415721 bp Feature: domain Description: DUF3849 Location: 241 5358-241 5721 bp Feature: gene Location: 2415845-2416843 bp Feature: domain Description: KOG1000 Location: 2415848-2416043 bp Feature: domain Description: KOG1 000 Location: 241 5848-241 6043 bp Feature: gene Location: 2416998-2418848 bp Ori: QCI59928.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2417298-2418039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 7298-241 8039 bp Feature: domain Description: HNHc Note: nucleases Location: 2418591-2418738 bp Feature: domain Description: HNHc Note: nucleases Location: 241 8591 -241 8738 bp Feature: gene Location: 2419561-2427347 bp Feature: gene Location: 2427426-2427641 bp Ori: QCI59929.1 Feature: domain Description: TTRAP Location: 2427438-2427627 bp Feature: domain Description: TTRAP Location: 2427438-2427627 bp Feature: gene Location: 2440233-2441102 bp Feature: gene Location: 2441172-2441273 bp Feature: domain Description: Maff2 Location: 2441175-2441265 bp Feature: domain Description: Maff2 Location: 2441 1 75-2441 265 bp Feature: gene Location: 2441422-2443308 bp Ori: QCI59941.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441755-2442493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441 755-2442493 bp Feature: domain Description: HNHc Note: nucleases Location: 2443042-2443192 bp Feature: domain Description: HNHc Note: nucleases Location: 2443042-24431 92 bp Feature: gene Location: 2444028-2444159 bp Ori: QCI59942.1 Feature: domain Description: Maff2 Location: 2444031-2444157 bp Feature: domain Description: Maff2 Location: 2444031 -24441 57 bp Feature: gene Location: 2444379-2446208 bp Ori: QCI59943.1 Feature: domain Description: VirD4 Location: 2444622-2444946 bp Feature: domain Description: VirD4 Location: 2444622-2444946 bp Feature: domain Description: VirD4 Location: 2445024-2446107 bp Feature: domain Description: VirD4 Location: 2445024-24461 07 bp Feature: gene Location: 3462972-3464882 bp Ori: QCI60805.1 Feature: domain Description: SCAD_SBCAD Location: 3462996-3464106 bp Feature: domain Description: SCAD_SBCAD Location: 3462996-34641 06 bp Feature: domain Description: fixB Location: 3464298-3464649 bp Feature: domain Description: fixB Location: 3464298-3464649 bp Feature: domain Description: rubredoxin Location: 3464733-3464877 bp Feature: domain Description: rubredoxin Location: 3464733-3464877 bp Feature: gene Location: 3464948-3465352 bp Ori: QCI60806.1 Feature: domain Description: IscR Location: 3464957-3465344 bp Feature: domain Description: IscR Location: 3464957-3465344 bp Feature: gene Location: 3466095-3467057 bp Ori: QCI60807.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3466209-3466761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3466209-3466761 bp Feature: gene Location: 3467196-3468041 bp Ori: QCI60808.1 Feature: domain Description: Phage_int_SAM_1 Location: 3467232-3467454 bp Feature: domain Description: Phage_int_SAM_1 Location: 3467232-3467454 bp Feature: domain Description: INT_C_like_2 Location: 3467529-3468021 bp Feature: domain Description: INT_C_like_2 Location: 3467529-3468021 bp Feature: gene Location: 3468050-3468457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_3 (pfam07523), RVT-DGRs, Maff2 (pfam12750), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), DEDD_Tnp_IS110 (pfam01548), HHH_5 (pfam14520), Transposase_20 (pfam02371)
Spr (COG0791), TraC-F-type (TIGR02746), ChiA1_BD (cd12214), DUF3848 (pfam12959), DUF3849 (pfam12960), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), TTRAP (pfam14203), SCAD_SBCAD (cd01158), fixB (PRK03363), rubredoxin (cd00730)
IscR (TIGR02010), RVT-Retrons, Phage_int_SAM_1 (pfam02899), INT_C_like_2 (cd01191)