myRT

myRT report for GCA_005144885.1_ASM514488v1

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Seq: CP039690.1 Phreatobacter stygius strain KCTC 52518 chromosome, complete genome (7354671 bp)
Overview 1 RT 1: 825618-829561 bp 2 RT 2: 1861812-1866502 bp 3 RT 3: 2235538-2239962 bp 4 RT 4: 2352778-2357855 bp 5 RT 5: 2745003-2749299 bp 6 RT 6: 3343508-3349441 bp 7 RT 7: 7269856-7274661 bp Neighborhood of RT #1 [825618, 829596] Rieske_proteo TrmL RVT-GII GIIM LomR Neighborhood of RT #2 [1861812, 1866504] RsmC RVT-GII GIIM PRK13017 Neighborhood of RT #3 [2235538, 2239964] PRK00772 RVT-GII GIIM DUF4167 Neighborhood of RT #4 [2352778, 2357932] YcaR rpoH2 RVT-GII GIIM Transposase_mut RVT-GII CdnL Neighborhood of RT #5 [2745003, 2749352] RVT-GII GIIM PRK05753 DUF2218 siderophore_interacting Neighborhood of RT #6 [3343508, 3349441] LomR RVT-GII GIIM AroG2 Neighborhood of RT #7 [7269856, 7274684] rve RVT-GII GIIM clpX Feature: gene Location: 825618-826172 bp Ori: QCI63453.1 Gene: petA Feature: domain Description: Rieske_proteo Location: 825657-826149 bp Feature: domain Description: Rieske_proteo Location: 825657-8261 49 bp Feature: gene Location: 826522-826989 bp Ori: QCI69028.1 Feature: domain Description: TrmL Location: 826525-826972 bp Feature: domain Description: TrmL Location: 826525-826972 bp Feature: gene Location: 827076-828437 bp Ori: QCI63454.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827403-828015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827403-82801 5 bp Feature: domain Description: GIIM Note: maturase Location: 828072-828279 bp Feature: domain Description: GIIM Note: maturase Location: 828072-828279 bp Feature: gene Location: 828497-828826 bp Feature: gene Location: 828883-829596 bp Ori: QCI63455.1 Feature: domain Description: LomR Location: 828886-829561 bp Feature: domain Description: LomR Location: 828886-829561 bp Feature: gene Location: 1861812-1862747 bp Ori: QCI64277.1 Feature: domain Description: RsmC Location: 1861956-1862745 bp Feature: domain Description: RsmC Location: 1 861 956-1 862745 bp Feature: gene Location: 1862746-1862939 bp Feature: gene Location: 1862886-1864247 bp Ori: QCI64278.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1863213-1863825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 86321 3-1 863825 bp Feature: domain Description: GIIM Note: maturase Location: 1863882-1864089 bp Feature: domain Description: GIIM Note: maturase Location: 1 863882-1 864089 bp Feature: gene Location: 1864307-1864636 bp Feature: gene Location: 1864699-1866504 bp Ori: QCI64279.1 Feature: domain Description: PRK13017 Location: 1864714-1866502 bp Feature: domain Description: PRK1 301 7 Location: 1 86471 4-1 866502 bp Feature: gene Location: 2235538-2235798 bp Feature: gene Location: 2235856-2236968 bp Ori: QCI64569.1 Gene: leuB Feature: domain Description: PRK00772 Location: 2235865-2236954 bp Feature: domain Description: PRK00772 Location: 2235865-2236954 bp Feature: gene Location: 2237138-2238499 bp Ori: QCI64570.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2237465-2238077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2237465-2238077 bp Feature: domain Description: GIIM Note: maturase Location: 2238134-2238341 bp Feature: domain Description: GIIM Note: maturase Location: 22381 34-2238341 bp Feature: gene Location: 2238559-2238888 bp Feature: gene Location: 2239722-2239964 bp Feature: domain Description: DUF4167 Location: 2239752-2239962 bp Feature: domain Description: DUF41 67 Location: 2239752-2239962 bp Feature: gene Location: 2352778-2353029 bp Ori: QCI64668.1 Feature: domain Description: YcaR Location: 2352865-2353021 bp Feature: domain Description: YcaR Location: 2352865-2353021 bp Feature: gene Location: 2353038-2353913 bp Ori: QCI69155.1 Feature: domain Description: rpoH2 Location: 2353056-2353902 bp Feature: domain Description: rpoH2 Location: 2353056-2353902 bp Feature: gene Location: 2354174-2354805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2354177-2354387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23541 77-2354387 bp Feature: domain Description: GIIM Note: maturase Location: 2354444-2354621 bp Feature: domain Description: GIIM Note: maturase Location: 2354444-2354621 bp Feature: gene Location: 2354907-2356106 bp Ori: QCI64669.1 Feature: domain Description: Transposase_mut Location: 2354934-2356020 bp Feature: domain Description: Transposase_mut Location: 2354934-2356020 bp Feature: gene Location: 2356117-2356905 bp Ori: QCI64670.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2356444-2356849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2356444-2356849 bp Feature: gene Location: 2356965-2357294 bp Feature: gene Location: 2357348-2357932 bp Ori: QCI64671.1 Feature: domain Description: CdnL Location: 2357378-2357855 bp Feature: domain Description: CdnL Location: 2357378-2357855 bp Feature: gene Location: 2745003-2745260 bp Feature: gene Location: 2745360-2745689 bp Feature: gene Location: 2745749-2747110 bp Ori: QCI64994.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2746076-2746688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2746076-2746688 bp Feature: domain Description: GIIM Note: maturase Location: 2746745-2746952 bp Feature: domain Description: GIIM Note: maturase Location: 2746745-2746952 bp Feature: gene Location: 2747552-2747983 bp Ori: QCI64995.1 Feature: domain Description: PRK05753 Location: 2747588-2747972 bp Feature: domain Description: PRK05753 Location: 2747588-2747972 bp Feature: gene Location: 2748252-2749352 bp Ori: QCI64996.1 Feature: domain Description: DUF2218 Location: 2748273-2748537 bp Feature: domain Description: DUF221 8 Location: 2748273-2748537 bp Feature: domain Description: siderophore_interacting Location: 2748591-2749299 bp Feature: domain Description: siderophore_interacting Location: 2748591 -2749299 bp Feature: gene Location: 3343508-3344440 bp Ori: QCI65509.1 Feature: domain Description: LomR Location: 3343601-3344432 bp Feature: domain Description: LomR Location: 3343601 -3344432 bp Feature: gene Location: 3344499-3344828 bp Feature: gene Location: 3344888-3346249 bp Ori: QCI65510.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3345215-3345827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334521 5-3345827 bp Feature: domain Description: GIIM Note: maturase Location: 3345884-3346091 bp Feature: domain Description: GIIM Note: maturase Location: 3345884-3346091 bp Feature: gene Location: 3346353-3347738 bp Ori: QCI65511.1 Feature: domain Description: AroG2 Location: 3346359-3347691 bp Feature: domain Description: AroG2 Location: 3346359-3347691 bp Feature: gene Location: 3347888-3349441 bp Feature: gene Location: 7269856-7270821 bp Ori: QCI68895.1 Feature: domain Description: rve Location: 7270255-7270618 bp Feature: domain Description: rve Location: 7270255-727061 8 bp Feature: gene Location: 7271050-7271412 bp Feature: gene Location: 7271619-7272980 bp Ori: QCI68897.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7271946-7272558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7271 946-7272558 bp Feature: domain Description: GIIM Note: maturase Location: 7272615-7272822 bp Feature: domain Description: GIIM Note: maturase Location: 727261 5-7272822 bp Feature: gene Location: 7273040-7273369 bp Feature: gene Location: 7273428-7274684 bp Ori: QCI68898.1 Gene: clpX Feature: domain Description: clpX Location: 7273449-7274661 bp Feature: domain Description: clpX Location: 7273449-7274661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rieske_proteo (TIGR01416), TrmL (COG0219), RVT-GII, GIIM (pfam08388), LomR (COG3637), RsmC (COG2813), PRK13017 (dihydroxy-acid dehydratase; Provisional), PRK00772 (3-isopropylmalate dehydrogenase; Provisional), DUF4167 (pfam13763), YcaR (COG2835)
rpoH2 (PRK07500), Transposase_mut (pfam00872), CdnL (COG1329), PRK05753 (nucleoside diphosphate kinase regulator; Provisional), DUF2218 (pfam09981), siderophore_interacting (cd06193), AroG2 (COG3200), rve (pfam00665), clpX