myRT

myRT report for GCA_005145025.1_ASM514502v1

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Seq: CP039695.1 Novosphingobium sp. ABRDHK2 chromosome, complete genome (3668042 bp)
Overview 1 RT 1: 895693-900456 bp 2 RT 2: 1305416-1310853 bp 3 RT 3: 3325299-3329794 bp Neighborhood of RT #1 [895693, 900456] RVT-GII GIIM Neighborhood of RT #2 [1305416, 1310853] NDUFA9_like_SDR_a PRK09692 RVT-Retrons Neighborhood of RT #3 [3325299, 3329811] AcrR COG3607 RVT-GII GIIM YbaA SgaA_N_like SgaA_N_like Feature: gene Location: 895693-895959 bp Feature: gene Location: 895961-897436 bp Feature: gene Location: 897987-899501 bp Ori: QCI92880.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898245-898980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 898245-898980 bp Feature: domain Description: GIIM Note: maturase Location: 899052-899280 bp Feature: domain Description: GIIM Note: maturase Location: 899052-899280 bp Feature: gene Location: 899629-900033 bp Feature: gene Location: 900229-900456 bp Feature: gene Location: 1305416-1306378 bp Ori: QCI93207.1 Feature: domain Description: NDUFA9_like_SDR_a Location: 1305458-1306244 bp Feature: domain Description: NDUFA9_like_SDR_a Location: 1 305458-1 306244 bp Feature: gene Location: 1306847-1308049 bp Ori: QCI93208.1 Feature: domain Description: PRK09692 Location: 1306856-1308032 bp Feature: domain Description: PRK09692 Location: 1 306856-1 308032 bp Feature: gene Location: 1308285-1309214 bp Ori: QCI93209.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1308390-1308978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 308390-1 308978 bp Feature: gene Location: 1309202-1310065 bp Feature: gene Location: 1310611-1310853 bp Feature: gene Location: 3325299-3325946 bp Ori: QCI94907.1 Feature: domain Description: AcrR Location: 3325338-3325902 bp Feature: domain Description: AcrR Location: 3325338-3325902 bp Feature: gene Location: 3325943-3326362 bp Ori: QCI94908.1 Feature: domain Description: COG3607 Location: 3325949-3326333 bp Feature: domain Description: COG3607 Location: 3325949-3326333 bp Feature: gene Location: 3327073-3328587 bp Ori: QCI94909.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3327331-3328066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3327331 -3328066 bp Feature: domain Description: GIIM Note: maturase Location: 3328138-3328366 bp Feature: domain Description: GIIM Note: maturase Location: 33281 38-3328366 bp Feature: gene Location: 3328673-3329020 bp Ori: QCI94910.1 Feature: domain Description: YbaA Location: 3328676-3329006 bp Feature: domain Description: YbaA Location: 3328676-3329006 bp Feature: gene Location: 3329017-3329811 bp Ori: QCI94911.1 Feature: domain Description: SgaA_N_like Location: 3329038-3329383 bp Feature: domain Description: SgaA_N_like Location: 3329038-3329383 bp Feature: domain Description: SgaA_N_like Location: 3329461-3329794 bp Feature: domain Description: SgaA_N_like Location: 3329461 -3329794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NDUFA9_like_SDR_a (cd05271), PRK09692 (Integrase; provisional), RVT-Retrons, AcrR (COG1309), COG3607 (Predicted lactoylglutathione lyase ), YbaA (COG5507), SgaA_N_like (cd07247)

Seq: CP039697.1 Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence (757197 bp)
Overview 1 RT 1: 88920-95893 bp Neighborhood of RT #1 [88920, 95904] OEP OEP ligand_gated_channel RVT-GII GIIM Plug PAP2_acid_phosphatase Feature: gene Location: 88920-90347 bp Ori: QCI95695.1 Feature: domain Description: OEP Location: 89142-89667 bp Feature: domain Description: OEP Location: 89142 -89667 bp Feature: domain Description: OEP Location: 89757-90273 bp Feature: domain Description: OEP Location: 89757-902 73 bp Feature: gene Location: 90491-91804 bp Ori: QCI95696.1 Feature: domain Description: ligand_gated_channel Location: 90752-91739 bp Feature: domain Description: ligand_gated_channel Location: 90752 -91739 bp Feature: gene Location: 91914-93428 bp Ori: QCI95697.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92172-92907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 172 -92 907 bp Feature: domain Description: GIIM Note: maturase Location: 92979-93207 bp Feature: domain Description: GIIM Note: maturase Location: 92 979-932 07 bp Feature: gene Location: 93979-95154 bp Ori: QCI95698.1 Feature: domain Description: Plug Location: 94243-94570 bp Feature: domain Description: Plug Location: 942 43-94570 bp Feature: gene Location: 95203-95904 bp Ori: QCI95699.1 Feature: domain Description: PAP2_acid_phosphatase Location: 95299-95893 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 952 99-95893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OEP (pfam02321), ligand_gated_channel (cd01347), RVT-GII, GIIM (pfam08388), Plug (pfam07715), PAP2_acid_phosphatase (cd03397)