myRT

myRT report for GCA_005145065.1_ASM514506v1

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Seq: CP039702.1 Clostridium butyricum strain 29-1 chromosome, complete genome (3814519 bp)
Overview 1 RT 1: 2109604-2115176 bp 2 RT 2: 3211195-3217695 bp 3 RT 3: 3416589-3421927 bp Neighborhood of RT #1 [2109604, 2115232] PadR RVT-UG24 INT_ICEBs1_C_like Neighborhood of RT #2 [3211195, 3217706] GT4_WlbH-like GalU RVT-GII HNHc GalU BaeS Neighborhood of RT #3 [3416589, 3422052] YveK GalU RVT-GII HNHc GalU DUF820 Feature: gene Location: 2109604-2110146 bp Ori: QCJ02840.1 Feature: domain Description: PadR Location: 2109628-2110003 bp Feature: domain Description: PadR Location: 21 09628-21 1 0003 bp Feature: gene Location: 2110232-2110591 bp Feature: gene Location: 2110848-2114108 bp Ori: QCJ02841.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2111355-2111835 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 21 1 1 355-21 1 1 835 bp Feature: gene Location: 2114098-2114670 bp Feature: gene Location: 2115071-2115232 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2115077-2115176 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 21 1 5077-21 1 51 76 bp Feature: gene Location: 3211195-3212277 bp Ori: QCJ03740.1 Feature: domain Description: GT4_WlbH-like Location: 3211228-3212263 bp Feature: domain Description: GT4_WlbH-like Location: 321 1 228-321 2263 bp Feature: gene Location: 3212653-3213336 bp Feature: domain Description: GalU Location: 3212659-3213301 bp Feature: domain Description: GalU Location: 321 2659-321 3301 bp Feature: gene Location: 3213454-3215175 bp Ori: QCJ04189.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3213682-3214378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 3682-321 4378 bp Feature: domain Description: HNHc Note: nucleases Location: 3214927-3215065 bp Feature: domain Description: HNHc Note: nucleases Location: 321 4927-321 5065 bp Feature: gene Location: 3216003-3216203 bp Feature: domain Description: GalU Location: 3216006-3216204 bp Feature: domain Description: GalU Location: 321 6006-321 6204 bp Feature: gene Location: 3216456-3217706 bp Ori: QCJ03741.1 Feature: domain Description: BaeS Location: 3216816-3217695 bp Feature: domain Description: BaeS Location: 321 681 6-321 7695 bp Feature: gene Location: 3416589-3417275 bp Ori: QCJ03862.1 Feature: domain Description: YveK Location: 3416598-3417258 bp Feature: domain Description: YveK Location: 341 6598-341 7258 bp Feature: gene Location: 3417731-3418408 bp Feature: domain Description: GalU Location: 3417737-3418385 bp Feature: domain Description: GalU Location: 341 7737-341 8385 bp Feature: gene Location: 3418526-3420247 bp Ori: QCJ04196.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3418754-3419450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 8754-341 9450 bp Feature: domain Description: HNHc Note: nucleases Location: 3419999-3420137 bp Feature: domain Description: HNHc Note: nucleases Location: 341 9999-34201 37 bp Feature: gene Location: 3421075-3421281 bp Feature: domain Description: GalU Location: 3421084-3421282 bp Feature: domain Description: GalU Location: 3421 084-3421 282 bp Feature: gene Location: 3421465-3422052 bp Ori: QCJ03863.1 Feature: domain Description: DUF820 Location: 3421519-3421927 bp Feature: domain Description: DUF820 Location: 3421 51 9-3421 927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PadR (pfam03551), RVT-UG24, INT_ICEBs1_C_like (cd01189), GT4_WlbH-like (cd03798), GalU (COG1210), RVT-GII, HNHc (smart00507), BaeS (COG0642), YveK (COG3944), DUF820

Seq: CP039703.1 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence (794286 bp)
Overview 1 RT 1: 38302-46921 bp Neighborhood of RT #1 [38302, 46921] MarR ADA RVT-Retrons Feature: gene Location: 38302-38733 bp Ori: QCJ04228.1 Feature: domain Description: MarR Location: 38347-38722 bp Feature: domain Description: MarR Location: 38347-3872 2 bp Feature: gene Location: 39092-40084 bp Ori: QCJ04229.1 Feature: domain Description: ADA Location: 39107-40076 bp Feature: domain Description: ADA Location: 39107-40076 bp Feature: gene Location: 40672-42180 bp Ori: QCJ04230.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41308-41956 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41308-41956 bp Feature: gene Location: 42177-43985 bp Feature: gene Location: 43985-46921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), ADA (cd01320), RVT-Retrons