myRT

myRT report for GCA_005145085.1_ASM514508v1

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Seq: CP039705.1 Clostridium butyricum strain 4-1 chromosome, complete genome (3867296 bp)
Overview 1 RT 1: 1356211-1360868 bp 2 RT 2: 2392149-2399694 bp Neighborhood of RT #1 [1356211, 1360885] COG4870 COG3666 DDE_Tnp_1_6 RVT-GII GalU TraX Neighborhood of RT #2 [2392149, 2399705] RES PinE RVT-UG5 nitrilase MoaF MoaF_C HTH_BmrR BltR2 Feature: gene Location: 1356211-1357050 bp Ori: QCJ05946.1 Feature: domain Description: COG4870 Location: 1356325-1357033 bp Feature: domain Description: COG4870 Location: 1 356325-1 357033 bp Feature: gene Location: 1357502-1358179 bp Feature: domain Description: COG3666 Location: 1357559-1357883 bp Feature: domain Description: COG3666 Location: 1 357559-1 357883 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1358045-1358177 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 358045-1 3581 77 bp Feature: gene Location: 1358174-1358683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1358474-1358684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 358474-1 358684 bp Feature: gene Location: 1358859-1359758 bp Ori: QCJ08125.1 Gene: galU Feature: domain Description: GalU Location: 1358868-1359726 bp Feature: domain Description: GalU Location: 1 358868-1 359726 bp Feature: gene Location: 1360067-1360885 bp Ori: QCJ05947.1 Feature: domain Description: TraX Location: 1360097-1360868 bp Feature: domain Description: TraX Location: 1 360097-1 360868 bp Feature: gene Location: 2392149-2393216 bp Ori: QCJ06774.1 Feature: domain Description: RES Location: 2392683-2393196 bp Feature: domain Description: RES Location: 2392683-23931 96 bp Feature: gene Location: 2393291-2393896 bp Ori: QCJ06775.1 Feature: domain Description: PinE Location: 2393297-2393864 bp Feature: domain Description: PinE Location: 2393297-2393864 bp Feature: gene Location: 2394196-2397183 bp Ori: QCJ06776.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2394697-2395207 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2394697-2395207 bp Feature: domain Description: nitrilase Location: 2396368-2397031 bp Feature: domain Description: nitrilase Location: 2396368-2397031 bp Feature: gene Location: 2398037-2398864 bp Ori: QCJ06777.1 Feature: domain Description: MoaF Location: 2398061-2398385 bp Feature: domain Description: MoaF Location: 2398061 -2398385 bp Feature: domain Description: MoaF_C Location: 2398508-2398850 bp Feature: domain Description: MoaF_C Location: 2398508-2398850 bp Feature: gene Location: 2398872-2399705 bp Ori: QCJ06778.1 Feature: domain Description: HTH_BmrR Location: 2398911-2399235 bp Feature: domain Description: HTH_BmrR Location: 239891 1 -2399235 bp Feature: domain Description: BltR2 Location: 2399403-2399694 bp Feature: domain Description: BltR2 Location: 2399403-2399694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4870 (Cysteine protease, C1A family ), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GalU (COG1210), TraX (pfam05857), RES (smart00953), PinE (COG1961), RVT-UG5, nitrilase (cl11424)
MoaF (pfam10703), MoaF_C (pfam17409), HTH_BmrR (cd01107), BltR2 (COG4978)

Seq: CP039706.1 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence (769292 bp)
Overview 1 RT 1: 645689-654298 bp Neighborhood of RT #1 [645689, 654309] RVT-Retrons ADA MarR Feature: gene Location: 645689-648625 bp Feature: gene Location: 648625-650433 bp Feature: gene Location: 650430-651938 bp Ori: QCJ08680.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 651066-651714 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 651066-651714 bp Feature: gene Location: 652527-653519 bp Ori: QCJ08681.1 Feature: domain Description: ADA Location: 652542-653511 bp Feature: domain Description: ADA Location: 652 542 -653511 bp Feature: gene Location: 653878-654309 bp Ori: QCJ08682.1 Feature: domain Description: MarR Location: 653923-654298 bp Feature: domain Description: MarR Location: 65392 3-6542 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ADA (cd01320), MarR (pfam01047)