myRT

myRT report for GCA_005154805.1_ASM515480v1

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Seq: CP039727.1 Bacillus sp. S3 chromosome, complete genome (5436472 bp)
Overview 1 RT 1: 1494563-1503207 bp 2 RT 2: 1716882-1722760 bp 3 RT 3: 2093034-2098713 bp 4 RT 4: 2509516-2517120 bp 5 RT 5: 3200238-3206353 bp 6 RT 6: 4467788-4474130 bp 7 RT 7: 4866313-4871100 bp 8 RT 8: 5416968-5423345 bp Neighborhood of RT #1 [1494563, 1503245] YhaQ NatB RVT-GII GIIM GIIM MPP_Mre11_N YhaN Neighborhood of RT #2 [1716882, 1722768] PRK13780 PTS_I_fam RVT-GII GIIM GIIM MmsB Neighborhood of RT #3 [2093034, 2098778] YesN YesN YesM RVT-GII GIIM GIIM dppF DppD Neighborhood of RT #4 [2509516, 2517143] YbjD YbjD RVT-UG14 PLDc_Nuc_like_unchar2 Neighborhood of RT #5 [3200238, 3206355] GerA DegV RVT-GII GIIM GIIM DUF2535 hypE Neighborhood of RT #6 [4467788, 4474141] garR GntR RVT-GII GIIM GIIM GGDEF M20_Acy1_YhaA-like Neighborhood of RT #7 [4866313, 4871120] RVT-GII HNHc SMI1_KNR4 HmoA Neighborhood of RT #8 [5416968, 5423467] PRK06751 rpsF RVT-GII GIIM GIIM PRK09601 MopB_3 DMSO_red_II_alp Feature: gene Location: 1494563-1495462 bp Ori: QCJ41669.1 Feature: domain Description: YhaQ Location: 1494566-1495457 bp Feature: domain Description: YhaQ Location: 1 494566-1 495457 bp Feature: gene Location: 1495455-1496708 bp Ori: QCJ41670.1 Feature: domain Description: NatB Location: 1495458-1496697 bp Feature: domain Description: NatB Location: 1 495458-1 496697 bp Feature: gene Location: 1497393-1498829 bp Ori: QCJ45132.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1497621-1498245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 497621 -1 498245 bp Feature: domain Description: GIIM Note: maturase Location: 1498320-1498437 bp Feature: domain Description: GIIM Note: maturase Location: 1 498320-1 498437 bp Feature: domain Description: GIIM Note: maturase Location: 1498512-1498608 bp Feature: domain Description: GIIM Note: maturase Location: 1 49851 2-1 498608 bp Feature: gene Location: 1498997-1500232 bp Ori: QCJ41671.1 Feature: domain Description: MPP_Mre11_N Location: 1499015-1499660 bp Feature: domain Description: MPP_Mre1 1 _N Location: 1 49901 5-1 499660 bp Feature: gene Location: 1500207-1503245 bp Ori: QCJ41672.1 Feature: domain Description: YhaN Location: 1500237-1503207 bp Feature: domain Description: YhaN Location: 1 500237-1 503207 bp Feature: gene Location: 1716882-1717145 bp Ori: QCJ41880.1 Feature: domain Description: PRK13780 Location: 1716885-1717143 bp Feature: domain Description: PRK1 3780 Location: 1 71 6885-1 71 71 43 bp Feature: gene Location: 1717148-1718866 bp Ori: QCJ41881.1 Gene: ptsP Feature: domain Description: PTS_I_fam Location: 1717160-1718843 bp Feature: domain Description: PTS_I_fam Location: 1 71 71 60-1 71 8843 bp Feature: gene Location: 1719552-1720988 bp Ori: QCJ45144.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1719780-1720404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 9780-1 720404 bp Feature: domain Description: GIIM Note: maturase Location: 1720479-1720596 bp Feature: domain Description: GIIM Note: maturase Location: 1 720479-1 720596 bp Feature: domain Description: GIIM Note: maturase Location: 1720671-1720767 bp Feature: domain Description: GIIM Note: maturase Location: 1 720671 -1 720767 bp Feature: gene Location: 1721250-1721723 bp Feature: gene Location: 1721890-1722768 bp Ori: QCJ41883.1 Feature: domain Description: MmsB Location: 1721917-1722760 bp Feature: domain Description: MmsB Location: 1 721 91 7-1 722760 bp Feature: gene Location: 2093034-2093726 bp Ori: QCJ42219.1 Feature: domain Description: YesN Location: 2093040-2093379 bp Feature: domain Description: YesN Location: 2093040-2093379 bp Feature: domain Description: YesN Location: 2093397-2093712 bp Feature: domain Description: YesN Location: 2093397-209371 2 bp Feature: gene Location: 2093745-2094494 bp Ori: QCJ42220.1 Feature: domain Description: YesM Location: 2093883-2094402 bp Feature: domain Description: YesM Location: 2093883-2094402 bp Feature: gene Location: 2095201-2096637 bp Ori: QCJ45164.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2095429-2096053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2095429-2096053 bp Feature: domain Description: GIIM Note: maturase Location: 2096128-2096245 bp Feature: domain Description: GIIM Note: maturase Location: 20961 28-2096245 bp Feature: domain Description: GIIM Note: maturase Location: 2096320-2096416 bp Feature: domain Description: GIIM Note: maturase Location: 2096320-209641 6 bp Feature: gene Location: 2096768-2097760 bp Ori: QCJ42221.1 Feature: domain Description: dppF Location: 2096789-2097755 bp Feature: domain Description: dppF Location: 2096789-2097755 bp Feature: gene Location: 2097741-2098778 bp Ori: QCJ42222.1 Feature: domain Description: DppD Location: 2097765-2098713 bp Feature: domain Description: DppD Location: 2097765-209871 3 bp Feature: gene Location: 2509516-2510181 bp Feature: gene Location: 2510851-2512716 bp Ori: QCJ42582.1 Feature: domain Description: YbjD Location: 2510929-2511034 bp Feature: domain Description: YbjD Location: 251 0929-251 1 034 bp Feature: domain Description: YbjD Location: 2511397-2511904 bp Feature: domain Description: YbjD Location: 251 1 397-251 1 904 bp Feature: gene Location: 2513033-2514589 bp Ori: QCJ45192.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 2513381-2513741 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 251 3381 -251 3741 bp Feature: gene Location: 2514840-2515955 bp Feature: gene Location: 2516265-2517143 bp Ori: QCJ42584.1 Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 2516724-2517120 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 251 6724-251 71 20 bp Feature: gene Location: 3200238-3201752 bp Ori: QCJ43169.1 Feature: domain Description: GerA Location: 3200319-3201681 bp Feature: domain Description: GerA Location: 320031 9-3201 681 bp Feature: gene Location: 3201859-3202701 bp Ori: QCJ43170.1 Feature: domain Description: DegV Location: 3201871-3202690 bp Feature: domain Description: DegV Location: 3201 871 -3202690 bp Feature: gene Location: 3202854-3204290 bp Ori: QCJ45242.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3203082-3203706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3203082-3203706 bp Feature: domain Description: GIIM Note: maturase Location: 3203781-3203898 bp Feature: domain Description: GIIM Note: maturase Location: 3203781 -3203898 bp Feature: domain Description: GIIM Note: maturase Location: 3203973-3204069 bp Feature: domain Description: GIIM Note: maturase Location: 3203973-3204069 bp Feature: gene Location: 3204975-3205226 bp Ori: QCJ45243.1 Feature: domain Description: DUF2535 Location: 3204978-3205224 bp Feature: domain Description: DUF2535 Location: 3204978-3205224 bp Feature: gene Location: 3205354-3206355 bp Ori: QCJ43171.1 Gene: hypE Feature: domain Description: hypE Location: 3205405-3206353 bp Feature: domain Description: hypE Location: 3205405-3206353 bp Feature: gene Location: 4467788-4468687 bp Ori: QCJ44296.1 Feature: domain Description: garR Location: 4467791-4468673 bp Feature: domain Description: garR Location: 4467791 -4468673 bp Feature: gene Location: 4468958-4469581 bp Ori: QCJ45321.1 Feature: domain Description: GntR Location: 4468973-4469567 bp Feature: domain Description: GntR Location: 4468973-4469567 bp Feature: gene Location: 4469680-4471116 bp Ori: QCJ45322.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4469908-4470532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4469908-4470532 bp Feature: domain Description: GIIM Note: maturase Location: 4470607-4470724 bp Feature: domain Description: GIIM Note: maturase Location: 4470607-4470724 bp Feature: domain Description: GIIM Note: maturase Location: 4470799-4470895 bp Feature: domain Description: GIIM Note: maturase Location: 4470799-4470895 bp Feature: gene Location: 4471900-4472760 bp Ori: QCJ44297.1 Feature: domain Description: GGDEF Location: 4472260-4472752 bp Feature: domain Description: GGDEF Location: 4472260-4472752 bp Feature: gene Location: 4472981-4474141 bp Ori: QCJ44298.1 Feature: domain Description: M20_Acy1_YhaA-like Location: 4473011-4474130 bp Feature: domain Description: M20_Acy1 _YhaA-like Location: 447301 1 -44741 30 bp Feature: gene Location: 4866313-4866660 bp Feature: gene Location: 4866967-4867155 bp Feature: gene Location: 4867406-4869217 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4867712-4868402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486771 2-4868402 bp Feature: domain Description: HNHc Note: nucleases Location: 4868972-4869107 bp Feature: domain Description: HNHc Note: nucleases Location: 4868972-48691 07 bp Feature: gene Location: 4870131-4870676 bp Ori: QCJ44587.1 Feature: domain Description: SMI1_KNR4 Location: 4870263-4870539 bp Feature: domain Description: SMI1 _KNR4 Location: 4870263-4870539 bp Feature: gene Location: 4870827-4871120 bp Feature: domain Description: HmoA Location: 4870830-4871100 bp Feature: domain Description: HmoA Location: 4870830-4871 1 00 bp Feature: gene Location: 5416968-5417495 bp Ori: QCJ45021.1 Gene: ssb Feature: domain Description: PRK06751 Location: 5416971-5417493 bp Feature: domain Description: PRK06751 Location: 541 6971 -541 7493 bp Feature: gene Location: 5417566-5417853 bp Ori: QCJ45022.1 Feature: domain Description: rpsF Location: 5417569-5417848 bp Feature: domain Description: rpsF Location: 541 7569-541 7848 bp Feature: gene Location: 5418114-5419550 bp Ori: QCJ45394.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5418342-5418966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 8342-541 8966 bp Feature: domain Description: GIIM Note: maturase Location: 5419041-5419158 bp Feature: domain Description: GIIM Note: maturase Location: 541 9041 -541 91 58 bp Feature: domain Description: GIIM Note: maturase Location: 5419233-5419329 bp Feature: domain Description: GIIM Note: maturase Location: 541 9233-541 9329 bp Feature: gene Location: 5420236-5421336 bp Ori: QCJ45023.1 Gene: ychF Feature: domain Description: PRK09601 Location: 5420239-5421334 bp Feature: domain Description: PRK09601 Location: 5420239-5421 334 bp Feature: gene Location: 5421470-5423467 bp Ori: QCJ45024.1 Feature: domain Description: MopB_3 Location: 5421491-5423069 bp Feature: domain Description: MopB_3 Location: 5421 491 -5423069 bp Feature: domain Description: DMSO_red_II_alp Location: 5423105-5423345 bp Feature: domain Description: DMSO_red_II_alp Location: 54231 05-5423345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhaQ (COG4152), NatB (COG1668), RVT-GII, GIIM (pfam08388), MPP_Mre11_N (cd00840), YhaN (COG4717), PRK13780 (phosphocarrier protein HPr; Provisional), PTS_I_fam (TIGR01417), MmsB (COG2084), YesN (COG4753)
YesM (COG2972), dppF (PRK11308), DppD (COG0444), YbjD (COG3593), RVT-UG14, PLDc_Nuc_like_unchar2 (cd09174), GerA (pfam03323), DegV (TIGR00762), DUF2535 (pfam10751), hypE (TIGR02124)
garR (PRK11559), GntR (pfam00392), GGDEF (TIGR00254), M20_Acy1_YhaA-like (cd08021), HNHc (smart00507), SMI1_KNR4 (smart00860), HmoA (COG2329), PRK06751 (single-stranded DNA-binding protein; Provisional), rpsF (PRK14074), PRK09601 (redox-regulated ATPase YchF)
MopB_3 (cd02766), DMSO_red_II_alp (TIGR03479)

Seq: CP039728.1 Bacillus sp. S3 plasmid unnamed, complete sequence (241339 bp)
Overview 1 RT 1: 221075-230923 bp Neighborhood of RT #1 [221075, 230923] ebgA ebgA DUF4091 RVT-GII Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like xerS INT_RitA_C_like RVT-GII GIIM Feature: gene Location: 221075-224539 bp Ori: QCJ45567.1 Feature: domain Description: ebgA Location: 221186-221468 bp Feature: domain Description: ebgA Location: 2 2 1186-2 2 1468 bp Feature: domain Description: ebgA Location: 221576-224363 bp Feature: domain Description: ebgA Location: 2 2 1576-2 2 4363 bp Feature: gene Location: 224669-225274 bp Feature: domain Description: DUF4091 Location: 224888-225098 bp Feature: domain Description: DUF4091 Location: 2 2 4888-2 2 5098 bp Feature: gene Location: 225281-225457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225284-225458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 52 84-2 2 5458 bp Feature: gene Location: 225547-226560 bp Ori: QCJ45568.1 Feature: domain Description: Phage_int_SAM_1 Location: 225598-225844 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 2 5598-2 2 5844 bp Feature: domain Description: INT_RitC_C_like Location: 225925-226477 bp Feature: domain Description: INT_RitC_C_like Location: 2 2 592 5-2 2 6477 bp Feature: gene Location: 226547-227533 bp Ori: QCJ45569.1 Feature: domain Description: INT_RitB_C_like Location: 226883-227471 bp Feature: domain Description: INT_RitB_C_like Location: 2 2 6883-2 2 7471 bp Feature: gene Location: 227526-228761 bp Ori: QCJ45570.1 Feature: domain Description: xerS Location: 227880-228003 bp Feature: domain Description: xerS Location: 2 2 7880-2 2 8003 bp Feature: domain Description: INT_RitA_C_like Location: 228195-228732 bp Feature: domain Description: INT_RitA_C_like Location: 2 2 8195-2 2 8732 bp Feature: gene Location: 228994-229960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229012-229195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 9012 -2 2 9195 bp Feature: domain Description: GIIM Note: maturase Location: 229264-229492 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 92 64-2 2 9492 bp Feature: gene Location: 230310-230543 bp Feature: gene Location: 230546-230923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ebgA (PRK10340), DUF4091 (pfam13320), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), xerS (PRK05084), INT_RitA_C_like (cd01188), GIIM (pfam08388)