myRT

myRT report for GCA_005156265.1_ASM515626v1

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Seq: CP038453.1 Escherichia coli strain EC-129 chromosome, complete genome (4820005 bp)
Overview 1 RT 1: 517616-521376 bp 2 RT 2: 1880051-1885805 bp 3 RT 3: 3693159-3701935 bp 4 RT 4: 3704630-3708297 bp 5 RT 5: 4171882-4175259 bp 6 RT 6: 4184847-4192642 bp Neighborhood of RT #1 [517616, 521378] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [1880051, 1885805] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Neighborhood of RT #3 [3693159, 3702332] InsE RVT-GII GIIM PHA02517 PRK10945 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [3704630, 3708297] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4171882, 4175688] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4184847, 4192749] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 517616-518355 bp Feature: domain Description: InsE Location: 517619-517958 bp Feature: domain Description: InsE Location: 51 761 9-51 7958 bp Feature: gene Location: 518348-518719 bp Feature: gene Location: 519028-520536 bp Ori: QCJ62168.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 519286-520018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 9286-52001 8 bp Feature: domain Description: GIIM Note: maturase Location: 520093-520291 bp Feature: domain Description: GIIM Note: maturase Location: 520093-520291 bp Feature: gene Location: 520626-521099 bp Feature: domain Description: PHA02517 Location: 520632-521097 bp Feature: domain Description: PHA0251 7 Location: 520632-521 097 bp Feature: gene Location: 521142-521378 bp Feature: domain Description: DUF1016_N Location: 521199-521376 bp Feature: domain Description: DUF1 01 6_N Location: 521 1 99-521 376 bp Feature: gene Location: 1880051-1880545 bp Ori: QCJ59639.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1880195-1880369 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 8801 95-1 880369 bp Feature: gene Location: 1880565-1880720 bp Feature: gene Location: 1881201-1882301 bp Ori: QCJ59640.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1881384-1881912 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 881 384-1 881 91 2 bp Feature: gene Location: 1882416-1884662 bp Ori: QCJ59641.1 Feature: domain Description: AAA_15 Location: 1882419-1883427 bp Feature: domain Description: AAA_1 5 Location: 1 88241 9-1 883427 bp Feature: gene Location: 1885575-1885805 bp Feature: gene Location: 3693159-3693898 bp Feature: domain Description: InsE Location: 3693162-3693501 bp Feature: domain Description: InsE Location: 36931 62-3693501 bp Feature: gene Location: 3693891-3694262 bp Feature: gene Location: 3694571-3696079 bp Ori: QCJ62298.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3694829-3695561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3694829-3695561 bp Feature: domain Description: GIIM Note: maturase Location: 3695636-3695834 bp Feature: domain Description: GIIM Note: maturase Location: 3695636-3695834 bp Feature: gene Location: 3696169-3696642 bp Feature: domain Description: PHA02517 Location: 3696175-3696640 bp Feature: domain Description: PHA0251 7 Location: 36961 75-3696640 bp Feature: gene Location: 3697173-3697313 bp Ori: QCJ61212.1 Feature: domain Description: PRK10945 Location: 3697176-3697308 bp Feature: domain Description: PRK1 0945 Location: 36971 76-3697308 bp Feature: gene Location: 3698395-3698805 bp Feature: gene Location: 3698849-3699322 bp Feature: domain Description: PHA02517 Location: 3698855-3699320 bp Feature: domain Description: PHA0251 7 Location: 3698855-3699320 bp Feature: gene Location: 3699412-3700920 bp Ori: QCJ62302.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3699670-3700402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3699670-3700402 bp Feature: domain Description: GIIM Note: maturase Location: 3700477-3700675 bp Feature: domain Description: GIIM Note: maturase Location: 3700477-3700675 bp Feature: gene Location: 3701229-3701600 bp Feature: gene Location: 3701593-3702332 bp Feature: domain Description: InsE Location: 3701596-3701935 bp Feature: domain Description: InsE Location: 3701 596-3701 935 bp Feature: gene Location: 3704630-3705369 bp Feature: domain Description: InsE Location: 3704633-3704972 bp Feature: domain Description: InsE Location: 3704633-3704972 bp Feature: gene Location: 3705362-3705733 bp Feature: gene Location: 3706042-3707550 bp Ori: QCJ62303.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3706300-3707032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3706300-3707032 bp Feature: domain Description: GIIM Note: maturase Location: 3707107-3707305 bp Feature: domain Description: GIIM Note: maturase Location: 37071 07-3707305 bp Feature: gene Location: 3707640-3708113 bp Feature: domain Description: PHA02517 Location: 3707646-3708111 bp Feature: domain Description: PHA0251 7 Location: 3707646-37081 1 1 bp Feature: gene Location: 3708079-3708297 bp Feature: gene Location: 4171882-4172139 bp Feature: gene Location: 4172222-4172709 bp Feature: domain Description: PHA02517 Location: 4172225-4172396 bp Feature: domain Description: PHA0251 7 Location: 41 72225-41 72396 bp Feature: gene Location: 4172790-4174298 bp Ori: QCJ62325.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4173048-4173780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 73048-41 73780 bp Feature: domain Description: GIIM Note: maturase Location: 4173855-4174053 bp Feature: domain Description: GIIM Note: maturase Location: 41 73855-41 74053 bp Feature: gene Location: 4174607-4174975 bp Feature: gene Location: 4174971-4175688 bp Feature: domain Description: InsE Location: 4175010-4175259 bp Feature: domain Description: InsE Location: 41 7501 0-41 75259 bp Feature: gene Location: 4184847-4185586 bp Feature: domain Description: InsE Location: 4184850-4185189 bp Feature: domain Description: InsE Location: 41 84850-41 851 89 bp Feature: gene Location: 4185579-4185950 bp Feature: gene Location: 4186259-4187767 bp Ori: QCJ62326.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4186517-4187249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 8651 7-41 87249 bp Feature: domain Description: GIIM Note: maturase Location: 4187324-4187522 bp Feature: domain Description: GIIM Note: maturase Location: 41 87324-41 87522 bp Feature: gene Location: 4187857-4188330 bp Feature: domain Description: PHA02517 Location: 4187863-4188328 bp Feature: domain Description: PHA0251 7 Location: 41 87863-41 88328 bp Feature: gene Location: 4188372-4189474 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4188381-4188633 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 88381 -41 88633 bp Feature: gene Location: 4189929-4190861 bp Ori: QCJ61631.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4190031-4190625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 90031 -41 90625 bp Feature: gene Location: 4190863-4191831 bp Feature: gene Location: 4192477-4192749 bp Ori: QCJ61632.1 Feature: domain Description: PRK09678 Location: 4192486-4192642 bp Feature: domain Description: PRK09678 Location: 41 92486-41 92642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), PRK10945 (hemolysin expression modulator Hha), Arm-DNA-bind_3 (pfam13356)
PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: CP038458.1 Escherichia coli strain EC-129 plasmid pEC129_5, complete sequence (28640 bp)
Overview 1 RT 1: 5420-8873 bp Neighborhood of RT #1 [5420, 8911] PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Feature: gene Location: 5420-5851 bp Ori: QCJ62847.1 Gene: umuD Feature: domain Description: PRK10276 Location: 5471-5834 bp Feature: domain Description: PRK102 76 Location: 5471-5834 bp Feature: gene Location: 6009-6260 bp Feature: gene Location: 6260-7744 bp Ori: QCJ62868.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6662-7352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6662 -7352 bp Feature: gene Location: 7896-8593 bp Feature: domain Description: Zn_Tnp_IS1 Location: 7902-8004 bp Feature: domain Description: Zn_Tnp_IS1 Location: 7902 -8004 bp Feature: domain Description: HTH_Tnp_IS1 Location: 8025-8157 bp Feature: domain Description: HTH_Tnp_IS1 Location: 802 5-8157 bp Feature: gene Location: 8603-8911 bp Feature: domain Description: Rep_3 Location: 8609-8873 bp Feature: domain Description: Rep_3 Location: 8609-8873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051)