myRT

myRT report for GCA_005221765.1_ASM522176v1

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Seq: CP028651.1 Escherichia coli strain 124 plasmid pTA124, complete sequence (94057 bp)
Overview 1 RT 1: 57222-60793 bp Neighborhood of RT #1 [57222, 60793] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 57222-57518 bp Feature: gene Location: 57545-57759 bp Feature: gene Location: 57781-59505 bp Ori: QCM74702.1 Gene: ltrA Feature: domain Description: RVT_N Location: 57838-58075 bp Feature: domain Description: RVT_N Location: 57838-58075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58126-58774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 581 26-58774 bp Feature: domain Description: YkfC Location: 58906-59062 bp Feature: domain Description: YkfC Location: 58906-59062 bp Feature: domain Description: HNHc Note: nucleases Location: 59290-59449 bp Feature: domain Description: HNHc Note: nucleases Location: 59290-59449 bp Feature: gene Location: 59582-60484 bp Ori: QCM74703.1 Feature: domain Description: DUF1281 Location: 59651-60179 bp Feature: domain Description: DUF1 281 Location: 59651 -601 79 bp Feature: domain Description: DUF1281_C Location: 60185-60413 bp Feature: domain Description: DUF1 281 _C Location: 601 85-6041 3 bp Feature: gene Location: 60488-60793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: CP028650.1 Escherichia coli strain 124 chromosome, complete genome (5457282 bp)
Overview 1 RT 1: 781708-786414 bp 2 RT 2: 2470204-2473424 bp Neighborhood of RT #1 [781708, 786414] RVT_N RVT-GII YkfC HNHc PotE Neighborhood of RT #2 [2470204, 2473424] Minor_tail_Z Phage_tail_U RVT_N RVT-GII YkfC HNHc Feature: gene Location: 781708-782004 bp Feature: gene Location: 782031-782245 bp Feature: gene Location: 782267-783991 bp Ori: QCM70031.1 Gene: ltrA Feature: domain Description: RVT_N Location: 782324-782561 bp Feature: domain Description: RVT_N Location: 782 32 4-782 561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782612-783260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782 612 -7832 60 bp Feature: domain Description: YkfC Location: 783392-783548 bp Feature: domain Description: YkfC Location: 783392 -783548 bp Feature: domain Description: HNHc Note: nucleases Location: 783776-783935 bp Feature: domain Description: HNHc Note: nucleases Location: 783776-783935 bp Feature: gene Location: 784086-785210 bp Ori: QCM70032.1 Feature: domain Description: PotE Location: 784101-785151 bp Feature: domain Description: PotE Location: 784101-785151 bp Feature: gene Location: 785344-786414 bp Feature: gene Location: 2470204-2470782 bp Ori: QCM71664.1 Feature: domain Description: Minor_tail_Z Location: 2470213-2470780 bp Feature: domain Description: Minor_tail_Z Location: 2 4702 13-2 470780 bp Feature: gene Location: 2470779-2471108 bp Ori: QCM71665.1 Feature: domain Description: Phage_tail_U Location: 2470782-2471070 bp Feature: domain Description: Phage_tail_U Location: 2 470782 -2 471070 bp Feature: gene Location: 2471141-2472865 bp Ori: QCM71666.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2471198-2471435 bp Feature: domain Description: RVT_N Location: 2 471198-2 471435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2471486-2472134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 471486-2 472 134 bp Feature: domain Description: YkfC Location: 2472266-2472422 bp Feature: domain Description: YkfC Location: 2 472 2 66-2 472 42 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2472650-2472809 bp Feature: domain Description: HNHc Note: nucleases Location: 2 472 650-2 472 809 bp Feature: gene Location: 2472887-2473101 bp Feature: gene Location: 2473128-2473424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PotE (COG0531), Minor_tail_Z (pfam06763), Phage_tail_U (pfam06141)