myRT

myRT report for GCA_005221905.1_ASM522190v1

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Seq: CP028611.1 Escherichia coli strain 142 plasmid pTA142-2, complete sequence (88018 bp)
Overview 1 RT 1: 10326-14989 bp Neighborhood of RT #1 [10326, 14989] DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 10326-11297 bp Ori: QCL56820.1 Feature: domain Description: DUF1281 Location: 10464-10992 bp Feature: domain Description: DUF1 281 Location: 1 0464-1 0992 bp Feature: domain Description: DUF1281_C Location: 10998-11238 bp Feature: domain Description: DUF1 281 _C Location: 1 0998-1 1 238 bp Feature: gene Location: 11301-11605 bp Feature: gene Location: 11834-13534 bp Ori: QCL56821.1 Gene: ltrA Feature: domain Description: RVT_N Location: 11888-12131 bp Feature: domain Description: RVT_N Location: 1 1 888-1 21 31 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12176-12812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 76-1 281 2 bp Feature: domain Description: GIIM Note: maturase Location: 12863-13097 bp Feature: domain Description: GIIM Note: maturase Location: 1 2863-1 3097 bp Feature: domain Description: HNHc Note: nucleases Location: 13328-13478 bp Feature: domain Description: HNHc Note: nucleases Location: 1 3328-1 3478 bp Feature: gene Location: 14114-14767 bp Ori: QCL56822.1 Feature: domain Description: PRK13699 Location: 14159-14765 bp Feature: domain Description: PRK1 3699 Location: 1 41 59-1 4765 bp Feature: gene Location: 14768-14989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: CP028612.1 Escherichia coli strain 142 plasmid pTA142, complete sequence (92725 bp)
Overview 1 RT 1: 55900-59471 bp Neighborhood of RT #1 [55900, 59471] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 55900-56196 bp Feature: gene Location: 56223-56437 bp Feature: gene Location: 56459-58183 bp Ori: QCL56962.1 Gene: ltrA Feature: domain Description: RVT_N Location: 56516-56753 bp Feature: domain Description: RVT_N Location: 56516-56753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56804-57452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56804-57452 bp Feature: domain Description: YkfC Location: 57584-57740 bp Feature: domain Description: YkfC Location: 57584-57740 bp Feature: domain Description: HNHc Note: nucleases Location: 57968-58127 bp Feature: domain Description: HNHc Note: nucleases Location: 57968-5812 7 bp Feature: gene Location: 58260-59162 bp Ori: QCL56963.1 Feature: domain Description: DUF1281 Location: 58329-58857 bp Feature: domain Description: DUF12 81 Location: 5832 9-58857 bp Feature: domain Description: DUF1281_C Location: 58863-59091 bp Feature: domain Description: DUF12 81_C Location: 58863-59091 bp Feature: gene Location: 59166-59471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)