myRT

myRT report for GCA_005491425.1_ASM549142v1

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Seq: CP028083.1 Lysinibacillus sp. SGAir0095 chromosome, complete genome (4142194 bp)
Overview 1 RT 1: 284536-288458 bp 2 RT 2: 488795-492889 bp 3 RT 3: 963222-967473 bp 4 RT 4: 1423238-1426727 bp 5 RT 5: 2324445-2328999 bp 6 RT 6: 3104130-3106449 bp 7 RT 7: 3376859-3387283 bp 8 RT 8: 3418617-3425829 bp 9 RT 9: 3624961-3629272 bp 10 RT 10: 3764302-3770441 bp Neighborhood of RT #1 [284536, 288460] HPP RVT-GII GIIM DUF2975 Neighborhood of RT #2 [488795, 492966] DUF2663 RVT-GII GIIM Beta-lactamase Neighborhood of RT #3 [963222, 967473] PilZ RaiA Ribosom_S30AE_C RVT-GII GIIM Neighborhood of RT #4 [1423238, 1426741] lstR FtsW RVT-GII PadR GINS Neighborhood of RT #5 [2324445, 2329022] DltE GIIM RVT-GII rirA PRK13289 Neighborhood of RT #6 [3104130, 3106484] DUF326 RVT-GII VanZ Neighborhood of RT #7 [3376859, 3387285] VOC_like COG4715 HepA RVT-GII GIIM COG2374 COG2374 PRK09419 Neighborhood of RT #8 [3418617, 3425829] Beta-lactamase GIIM RVT-GII RVT-GII HNHc Neighborhood of RT #9 [3624961, 3629343] YkoI YkoI YkoI YkoI RVT-GII GIIM MS_channel Neighborhood of RT #10 [3764302, 3770503] bac_cardiolipin FliL LD-carboxypeptidase RVT-GII GIIM PRK01622 adjacent_YSIRK Feature: gene Location: 284536-285225 bp Feature: gene Location: 285345-285872 bp Ori: QCR30906.1 Feature: domain Description: HPP Location: 285513-285858 bp Feature: domain Description: HPP Location: 28551 3-285858 bp Feature: gene Location: 286390-287346 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286657-287275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286657-287275 bp Feature: gene Location: 287367-287723 bp Ori: QCR30907.1 Feature: domain Description: GIIM Note: maturase Location: 287379-287562 bp Feature: domain Description: GIIM Note: maturase Location: 287379-287562 bp Feature: gene Location: 287978-288460 bp Ori: QCR30908.1 Feature: domain Description: DUF2975 Location: 288071-288458 bp Feature: domain Description: DUF2975 Location: 288071 -288458 bp Feature: gene Location: 488795-489220 bp Feature: gene Location: 489372-489611 bp Ori: QCR31077.1 Feature: domain Description: DUF2663 Location: 489402-489585 bp Feature: domain Description: DUF2663 Location: 489402-489585 bp Feature: gene Location: 490505-491461 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490772-491390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490772-491 390 bp Feature: gene Location: 491482-491838 bp Ori: QCR31078.1 Feature: domain Description: GIIM Note: maturase Location: 491494-491677 bp Feature: domain Description: GIIM Note: maturase Location: 491 494-491 677 bp Feature: gene Location: 492007-492966 bp Ori: QCR34384.1 Feature: domain Description: Beta-lactamase Location: 492019-492889 bp Feature: domain Description: Beta-lactamase Location: 49201 9-492889 bp Feature: gene Location: 963222-963611 bp Ori: QCR31529.1 Feature: domain Description: PilZ Location: 963303-963543 bp Feature: domain Description: PilZ Location: 963303-963543 bp Feature: gene Location: 963966-964520 bp Ori: QCR31530.1 Gene: raiA Feature: domain Description: RaiA Location: 963975-964269 bp Feature: domain Description: RaiA Location: 963975-964269 bp Feature: domain Description: Ribosom_S30AE_C Location: 964341-964506 bp Feature: domain Description: Ribosom_S30AE_C Location: 964341 -964506 bp Feature: gene Location: 965079-966353 bp Ori: QCR31531.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 965280-965895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 965280-965895 bp Feature: domain Description: GIIM Note: maturase Location: 965955-966162 bp Feature: domain Description: GIIM Note: maturase Location: 965955-9661 62 bp Feature: gene Location: 966616-966927 bp Feature: gene Location: 966931-967473 bp Feature: gene Location: 1423238-1423660 bp Ori: QCR31933.1 Feature: domain Description: lstR Location: 1423241-1423643 bp Feature: domain Description: lstR Location: 1 423241 -1 423643 bp Feature: gene Location: 1423657-1425009 bp Ori: QCR31934.1 Feature: domain Description: FtsW Location: 1423879-1424956 bp Feature: domain Description: FtsW Location: 1 423879-1 424956 bp Feature: gene Location: 1425229-1425600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1425241-1425601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 425241 -1 425601 bp Feature: gene Location: 1426047-1426391 bp Ori: QCR31935.1 Feature: domain Description: PadR Location: 1426065-1426377 bp Feature: domain Description: PadR Location: 1 426065-1 426377 bp Feature: gene Location: 1426388-1426741 bp Ori: QCR31936.1 Feature: domain Description: GINS Location: 1426394-1426727 bp Feature: domain Description: GINS Location: 1 426394-1 426727 bp Feature: gene Location: 2324445-2325194 bp Ori: QCR32743.1 Feature: domain Description: DltE Location: 2324448-2325189 bp Feature: domain Description: DltE Location: 2324448-23251 89 bp Feature: gene Location: 2325331-2325687 bp Ori: QCR32744.1 Feature: domain Description: GIIM Note: maturase Location: 2325343-2325526 bp Feature: domain Description: GIIM Note: maturase Location: 2325343-2325526 bp Feature: gene Location: 2325708-2326664 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2325975-2326593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2325975-2326593 bp Feature: gene Location: 2327174-2327617 bp Ori: QCR32745.1 Feature: domain Description: rirA Location: 2327177-2327612 bp Feature: domain Description: rirA Location: 23271 77-232761 2 bp Feature: gene Location: 2327850-2329022 bp Ori: QCR32746.1 Feature: domain Description: PRK13289 Location: 2327853-2328999 bp Feature: domain Description: PRK1 3289 Location: 2327853-2328999 bp Feature: gene Location: 3104130-3104504 bp Feature: gene Location: 3105052-3105381 bp Ori: QCR33465.1 Feature: domain Description: DUF326 Location: 3105076-3105370 bp Feature: domain Description: DUF326 Location: 31 05076-31 05370 bp Feature: gene Location: 3105482-3105724 bp Ori: QCR33466.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3105485-3105653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 05485-31 05653 bp Feature: gene Location: 3105737-3105955 bp Feature: gene Location: 3105936-3106484 bp Ori: QCR33468.1 Feature: domain Description: VanZ Location: 3105957-3106449 bp Feature: domain Description: VanZ Location: 31 05957-31 06449 bp Feature: gene Location: 3376859-3377230 bp Ori: QCR33708.1 Feature: domain Description: VOC_like Location: 3376883-3377201 bp Feature: domain Description: VOC_like Location: 3376883-3377201 bp Feature: gene Location: 3377420-3380623 bp Ori: QCR33709.1 Feature: domain Description: COG4715 Location: 3377447-3377708 bp Feature: domain Description: COG471 5 Location: 3377447-3377708 bp Feature: domain Description: HepA Location: 3379043-3380615 bp Feature: domain Description: HepA Location: 3379043-338061 5 bp Feature: gene Location: 3380838-3382112 bp Ori: QCR33710.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3381039-3381654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3381 039-3381 654 bp Feature: domain Description: GIIM Note: maturase Location: 3381714-3381921 bp Feature: domain Description: GIIM Note: maturase Location: 3381 71 4-3381 921 bp Feature: gene Location: 3382666-3385185 bp Ori: QCR34541.1 Feature: domain Description: COG2374 Location: 3382795-3382990 bp Feature: domain Description: COG2374 Location: 3382795-3382990 bp Feature: domain Description: COG2374 Location: 3383377-3385177 bp Feature: domain Description: COG2374 Location: 3383377-33851 77 bp Feature: gene Location: 3385702-3387285 bp Feature: domain Description: PRK09419 Location: 3385705-3387283 bp Feature: domain Description: PRK0941 9 Location: 3385705-3387283 bp Feature: gene Location: 3418617-3419690 bp Ori: QCR33730.1 Feature: domain Description: Beta-lactamase Location: 3418716-3419613 bp Feature: domain Description: Beta-lactamase Location: 341 871 6-341 961 3 bp Feature: gene Location: 3419746-3420102 bp Ori: QCR33731.1 Feature: domain Description: GIIM Note: maturase Location: 3419758-3419941 bp Feature: domain Description: GIIM Note: maturase Location: 341 9758-341 9941 bp Feature: gene Location: 3420123-3421079 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3420390-3421008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3420390-3421 008 bp Feature: gene Location: 3422021-3423784 bp Ori: QCR34542.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3422279-3422978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3422279-3422978 bp Feature: domain Description: HNHc Note: nucleases Location: 3423536-3423671 bp Feature: domain Description: HNHc Note: nucleases Location: 3423536-3423671 bp Feature: gene Location: 3424653-3425090 bp Feature: gene Location: 3425251-3425829 bp Feature: gene Location: 3624961-3625731 bp Ori: QCR33895.1 Feature: domain Description: YkoI Location: 3625075-3625231 bp Feature: domain Description: YkoI Location: 3625075-3625231 bp Feature: domain Description: YkoI Location: 3625267-3625447 bp Feature: domain Description: YkoI Location: 3625267-3625447 bp Feature: domain Description: YkoI Location: 3625468-3625666 bp Feature: domain Description: YkoI Location: 3625468-3625666 bp Feature: gene Location: 3625836-3626321 bp Ori: QCR33896.1 Feature: domain Description: YkoI Location: 3625935-3626127 bp Feature: domain Description: YkoI Location: 3625935-36261 27 bp Feature: gene Location: 3626850-3627806 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3627117-3627735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36271 1 7-3627735 bp Feature: gene Location: 3627827-3628183 bp Ori: QCR33897.1 Feature: domain Description: GIIM Note: maturase Location: 3627839-3628022 bp Feature: domain Description: GIIM Note: maturase Location: 3627839-3628022 bp Feature: gene Location: 3628243-3629343 bp Ori: QCR33898.1 Feature: domain Description: MS_channel Location: 3628669-3629272 bp Feature: domain Description: MS_channel Location: 3628669-3629272 bp Feature: gene Location: 3764302-3765756 bp Ori: QCR33988.1 Gene: cls Feature: domain Description: bac_cardiolipin Location: 3764332-3765754 bp Feature: domain Description: bac_cardiolipin Location: 3764332-3765754 bp Feature: gene Location: 3765810-3766649 bp Ori: QCR33989.1 Feature: domain Description: FliL Location: 3765840-3766044 bp Feature: domain Description: FliL Location: 3765840-3766044 bp Feature: domain Description: LD-carboxypeptidase Location: 3766155-3766602 bp Feature: domain Description: LD-carboxypeptidase Location: 37661 55-3766602 bp Feature: gene Location: 3766888-3768162 bp Ori: QCR33990.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3767089-3767704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3767089-3767704 bp Feature: domain Description: GIIM Note: maturase Location: 3767764-3767971 bp Feature: domain Description: GIIM Note: maturase Location: 3767764-3767971 bp Feature: gene Location: 3768698-3769477 bp Ori: QCR33991.1 Feature: domain Description: PRK01622 Location: 3768710-3769430 bp Feature: domain Description: PRK01 622 Location: 376871 0-3769430 bp Feature: gene Location: 3769709-3770503 bp Ori: QCR33992.1 Feature: domain Description: adjacent_YSIRK Location: 3769733-3770441 bp Feature: domain Description: adjacent_YSIRK Location: 3769733-3770441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HPP (pfam04982), RVT-GII, GIIM (pfam08388), DUF2975 (pfam11188), DUF2663 (pfam10864), Beta-lactamase (pfam00144), PilZ (pfam07238), RaiA (COG1544), Ribosom_S30AE_C (pfam16321), lstR (PRK09416)
FtsW (COG0772), PadR (pfam03551), GINS (COG4817), DltE (COG3967), rirA (PRK11920), PRK13289 (NO-inducible flavohemoprotein), DUF326 (pfam03860), VanZ (pfam04892), VOC_like (cd16355), COG4715 (Uncharacterized conserved protein, contains Zn finger domain )
HepA (COG0553), COG2374 (Predicted extracellular nuclease ), PRK09419 (multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase), HNHc (smart00507), YkoI (COG3212), MS_channel (pfam00924), bac_cardiolipin (TIGR04265), FliL (pfam03748), LD-carboxypeptidase (cd14852), PRK01622 (membrane protein insertase YidC)
adjacent_YSIRK (TIGR04094)