myRT

myRT report for GCA_005517315.1_ASM551731v1

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Seq: CP040236.1 Enterococcus faecium strain VB3025 chromosome, complete genome (2855454 bp)
Overview 1 RT 1: 47892-54093 bp 2 RT 2: 2817782-2828696 bp Neighborhood of RT #1 [47892, 54093] Phage_int_SAM_3 INT_ICEBs1_C_like COG2865 RVT-AbiP2 HTH_XRE Neighborhood of RT #2 [2817782, 2828710] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 47892-49118 bp Ori: QCR65642.1 Feature: domain Description: Phage_int_SAM_3 Location: 48192-48267 bp Feature: domain Description: Phage_int_SAM_3 Location: 481 92-48267 bp Feature: domain Description: INT_ICEBs1_C_like Location: 48492-49050 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 48492-49050 bp Feature: gene Location: 49708-51156 bp Ori: QCR65643.1 Feature: domain Description: COG2865 Location: 49714-51112 bp Feature: domain Description: COG2865 Location: 4971 4-51 1 1 2 bp Feature: gene Location: 51302-52798 bp Ori: QCR68069.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 51710-52166 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 51 71 0-521 66 bp Feature: gene Location: 52970-53215 bp Ori: QCR65644.1 Feature: domain Description: HTH_XRE Location: 53021-53207 bp Feature: domain Description: HTH_XRE Location: 53021 -53207 bp Feature: gene Location: 53320-54093 bp Feature: gene Location: 2817782-2818135 bp Ori: QCR68047.1 Feature: domain Description: RelB_DinJ Location: 2818001-2818127 bp Feature: domain Description: RelB_DinJ Location: 281 8001 -281 81 27 bp Feature: gene Location: 2818204-2819220 bp Ori: QCR68048.1 Feature: domain Description: FtsK_SpoIIIE Location: 2818861-2819101 bp Feature: domain Description: FtsK_SpoIIIE Location: 281 8861 -281 91 01 bp Feature: gene Location: 2819814-2821688 bp Ori: QCR68049.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2820180-2820876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28201 80-2820876 bp Feature: domain Description: HNHc Note: nucleases Location: 2821416-2821575 bp Feature: domain Description: HNHc Note: nucleases Location: 2821 41 6-2821 575 bp Feature: gene Location: 2821700-2821786 bp Feature: gene Location: 2821814-2822170 bp Ori: QCR68156.1 Feature: domain Description: FtsK Location: 2821826-2822045 bp Feature: domain Description: FtsK Location: 2821 826-2822045 bp Feature: gene Location: 2823892-2825076 bp Ori: QCR68051.1 Feature: domain Description: HTH_XRE Location: 2823922-2824066 bp Feature: domain Description: HTH_XRE Location: 2823922-2824066 bp Feature: domain Description: Rol_Rep_N Location: 2824099-2824363 bp Feature: domain Description: Rol_Rep_N Location: 2824099-2824363 bp Feature: domain Description: Rep_trans Location: 2824387-2824999 bp Feature: domain Description: Rep_trans Location: 2824387-2824999 bp Feature: gene Location: 2825073-2825186 bp Ori: QCR68052.1 Feature: domain Description: DUF3789 Location: 2825100-2825184 bp Feature: domain Description: DUF3789 Location: 28251 00-28251 84 bp Feature: gene Location: 2825956-2827866 bp Ori: QCR68053.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826289-2827027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826289-2827027 bp Feature: domain Description: HNHc Note: nucleases Location: 2827582-2827747 bp Feature: domain Description: HNHc Note: nucleases Location: 2827582-2827747 bp Feature: gene Location: 2827970-2828194 bp Feature: gene Location: 2828207-2828710 bp Ori: QCR68054.1 Feature: domain Description: ArdA Location: 2828225-2828696 bp Feature: domain Description: ArdA Location: 2828225-2828696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-AbiP2, HTH_XRE (smart00530), RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674)
Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), ArdA (pfam07275)