myRT

myRT report for GCA_005518035.1_ASM551803v1

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Seq: CP040247.1 Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome (5301832 bp)
Overview 1 RT 1: 32711-39595 bp 2 RT 2: 125053-130131 bp 3 RT 3: 138759-144353 bp Neighborhood of RT #1 [32711, 39595] CzcO RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #2 [125053, 130142] XerC HTH_38 Tra8 RVT-GII GIIM Tra8 HTH_17 Neighborhood of RT #3 [138759, 144621] MhpC RVT-GII GIIM TetR_N TetR_C_35 CypX Feature: gene Location: 32711-33735 bp Feature: domain Description: CzcO Location: 32717-32903 bp Feature: domain Description: CzcO Location: 3271 7-32903 bp Feature: gene Location: 33767-35079 bp Feature: gene Location: 35264-37051 bp Ori: QCR75068.1 Gene: ltrA Feature: domain Description: RVT_N Location: 35294-35531 bp Feature: domain Description: RVT_N Location: 35294-35531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35591-36251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35591 -36251 bp Feature: domain Description: GIIM Note: maturase Location: 36320-36551 bp Feature: domain Description: GIIM Note: maturase Location: 36320-36551 bp Feature: gene Location: 37764-39002 bp Ori: QCR75069.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 37776-38247 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 37776-38247 bp Feature: domain Description: Transposase_20 Location: 38589-38841 bp Feature: domain Description: Transposase_20 Location: 38589-38841 bp Feature: gene Location: 39416-39595 bp Feature: gene Location: 125053-126180 bp Ori: QCR75113.1 Feature: domain Description: XerC Location: 125554-125935 bp Feature: domain Description: XerC Location: 1 25554-1 25935 bp Feature: gene Location: 126432-127232 bp Feature: domain Description: HTH_38 Location: 126495-126570 bp Feature: domain Description: HTH_38 Location: 1 26495-1 26570 bp Feature: domain Description: Tra8 Location: 126669-127233 bp Feature: domain Description: Tra8 Location: 1 26669-1 27233 bp Feature: gene Location: 127788-129299 bp Ori: QCR75114.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128169-128853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 281 69-1 28853 bp Feature: domain Description: GIIM Note: maturase Location: 128928-129144 bp Feature: domain Description: GIIM Note: maturase Location: 1 28928-1 291 44 bp Feature: gene Location: 129415-129873 bp Feature: domain Description: Tra8 Location: 129427-129844 bp Feature: domain Description: Tra8 Location: 1 29427-1 29844 bp Feature: gene Location: 129960-130142 bp Ori: QCR79324.1 Feature: domain Description: HTH_17 Location: 129963-130131 bp Feature: domain Description: HTH_1 7 Location: 1 29963-1 301 31 bp Feature: gene Location: 138759-139655 bp Ori: QCR75118.1 Feature: domain Description: MhpC Location: 138783-139635 bp Feature: domain Description: MhpC Location: 1 38783-1 39635 bp Feature: gene Location: 139703-139918 bp Feature: gene Location: 140448-141896 bp Ori: QCR75120.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140766-141453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40766-1 41 453 bp Feature: domain Description: GIIM Note: maturase Location: 141528-141723 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 528-1 41 723 bp Feature: gene Location: 142604-143233 bp Ori: QCR75121.1 Feature: domain Description: TetR_N Location: 142661-142793 bp Feature: domain Description: TetR_N Location: 1 42661 -1 42793 bp Feature: domain Description: TetR_C_35 Location: 142862-143195 bp Feature: domain Description: TetR_C_35 Location: 1 42862-1 431 95 bp Feature: gene Location: 143321-144621 bp Feature: domain Description: CypX Location: 143396-144353 bp Feature: domain Description: CypX Location: 1 43396-1 44353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CzcO (COG2072), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), XerC (COG4973), HTH_38 (pfam13936), Tra8 (COG2826), HTH_17 (pfam12728)
MhpC (COG0596), TetR_N (pfam00440), TetR_C_35 (pfam18556), CypX (COG2124)