myRT

myRT report for GCA_005519465.1_ASM551946v1

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Seq: CP027858.1 Streptomyces clavuligerus ATCC 27064 chromosome, complete genome (6748591 bp)
Overview 1 RT 1: 3514037-3521422 bp 2 RT 2: 4861397-4867037 bp 3 RT 3: 6177759-6181511 bp Neighborhood of RT #1 [3514037, 3521814] AbiEii AbiEii RVT-UNC PRK09694 Cas3_C CRISPR_Cse1 Neighborhood of RT #2 [4861397, 4867037] HTH_XRE Sa_NUDIX RVT-UG23 APH APH Neighborhood of RT #3 [6177759, 6181597] RVT-GII GIIM pPIWI_RE_X Feature: gene Location: 3514037-3514465 bp Feature: gene Location: 3514452-3515465 bp Ori: QCS06777.1 Feature: domain Description: AbiEii Location: 3514542-3514644 bp Feature: domain Description: AbiEii Location: 351 4542-351 4644 bp Feature: domain Description: AbiEii Location: 3514971-3515205 bp Feature: domain Description: AbiEii Location: 351 4971 -351 5205 bp Feature: gene Location: 3515494-3516765 bp Ori: QCS06778.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 3515764-3516211 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 351 5764-351 621 1 bp Feature: gene Location: 3516839-3519889 bp Ori: QCS06779.1 Feature: domain Description: PRK09694 Location: 3516890-3518978 bp Feature: domain Description: PRK09694 Location: 351 6890-351 8978 bp Feature: domain Description: Cas3_C Location: 3519371-3519677 bp Feature: domain Description: Cas3_C Location: 351 9371 -351 9677 bp Feature: gene Location: 3519880-3521814 bp Ori: QCS06780.1 Gene: casA Feature: domain Description: CRISPR_Cse1 Location: 3519886-3521422 bp Feature: domain Description: CRISPR_Cse1 Location: 351 9886-3521 422 bp Feature: gene Location: 4861397-4862296 bp Ori: QCS07780.1 Feature: domain Description: HTH_XRE Location: 4861496-4861655 bp Feature: domain Description: HTH_XRE Location: 4861 496-4861 655 bp Feature: gene Location: 4862616-4863323 bp Ori: QCS07781.1 Feature: domain Description: Sa_NUDIX Location: 4862730-4863321 bp Feature: domain Description: Sa_NUDIX Location: 4862730-4863321 bp Feature: gene Location: 4863419-4864903 bp Ori: QCS07782.1 Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 4863623-4864217 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 4863623-486421 7 bp Feature: gene Location: 4865707-4866504 bp Ori: QCS07783.1 Feature: domain Description: APH Location: 4865842-4866148 bp Feature: domain Description: APH Location: 4865842-48661 48 bp Feature: domain Description: APH Location: 4866184-4866382 bp Feature: domain Description: APH Location: 48661 84-4866382 bp Feature: gene Location: 4866840-4867037 bp Feature: gene Location: 6177759-6178136 bp Feature: gene Location: 6178380-6178670 bp Feature: gene Location: 6178712-6180142 bp Ori: QCS08779.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6179033-6179717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 79033-61 7971 7 bp Feature: domain Description: GIIM Note: maturase Location: 6179786-6180020 bp Feature: domain Description: GIIM Note: maturase Location: 61 79786-61 80020 bp Feature: gene Location: 6180441-6181157 bp Feature: gene Location: 6181067-6181597 bp Ori: QCS08780.1 Feature: domain Description: pPIWI_RE_X Location: 6181079-6181511 bp Feature: domain Description: pPIWI_RE_X Location: 61 81 079-61 81 51 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), RVT-UNC/RVT-UG23/RVT-GII/RVT-CRISPR(RVT-UNC), PRK09694 (CRISPR-associated helicase/endonuclease Cas3), Cas3_C (pfam18395), CRISPR_Cse1 (pfam09481), HTH_XRE (smart00530), Sa_NUDIX (pfam18167), RVT-UG23, APH (pfam01636), RVT-GII
GIIM (pfam08388), pPIWI_RE_X