myRT

myRT report for GCA_005576735.1_ASM557673v1

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Seq: CP040368.1 Enterococcus faecium strain VB3240 chromosome, complete genome (2805984 bp)
Overview 1 RT 1: 249789-262582 bp 2 RT 2: 1827973-1835539 bp 3 RT 3: 1838503-1843241 bp 4 RT 4: 2716138-2720728 bp Neighborhood of RT #1 [249789, 262582] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [1827973, 1835610] AAA_10 RVT-GII AAA_10 TcpE Neighborhood of RT #3 [1838503, 1843318] ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #4 [2716138, 2720736] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 HTH_XRE Feature: gene Location: 249789-249942 bp Feature: gene Location: 249965-251170 bp Ori: CP040368.1_249965_251170_+ Feature: domain Description: HTH_XRE Location: 250010-250154 bp Feature: domain Description: HTH_XRE Location: 25001 0-2501 54 bp Feature: domain Description: Rol_Rep_N Location: 250181-250448 bp Feature: domain Description: Rol_Rep_N Location: 2501 81 -250448 bp Feature: domain Description: Rep_trans Location: 250472-251081 bp Feature: domain Description: Rep_trans Location: 250472-251 081 bp Feature: gene Location: 251954-253864 bp Ori: CP040368.1_251954_253864_+ Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252287-253025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252287-253025 bp Feature: domain Description: HNHc Note: nucleases Location: 253580-253745 bp Feature: domain Description: HNHc Note: nucleases Location: 253580-253745 bp Feature: gene Location: 253968-254192 bp Feature: gene Location: 254309-254806 bp Ori: CP040368.1_254309_254806_+ Feature: domain Description: ArdA Location: 254327-254792 bp Feature: domain Description: ArdA Location: 254327-254792 bp Feature: gene Location: 254893-255285 bp Ori: CP040368.1_254893_255285_+ Feature: domain Description: TcpE Location: 254911-255211 bp Feature: domain Description: TcpE Location: 25491 1 -25521 1 bp Feature: gene Location: 255269-256774 bp Ori: CP040368.1_255269_256774_+ Feature: domain Description: AAA_10 Location: 256601-256772 bp Feature: domain Description: AAA_1 0 Location: 256601 -256772 bp Feature: gene Location: 257519-259345 bp Ori: CP040368.1_257519_259345_+ Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257819-258518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25781 9-25851 8 bp Feature: gene Location: 259380-260396 bp Ori: CP040368.1_259380_260396_+ Feature: domain Description: AAA_10 Location: 259461-260364 bp Feature: domain Description: AAA_1 0 Location: 259461 -260364 bp Feature: gene Location: 260399-262582 bp Feature: gene Location: 1827973-1830102 bp Feature: gene Location: 1830107-1831126 bp Ori: CP040368.1_1830107_1831126_- Feature: domain Description: AAA_10 Location: 1830191-1831091 bp Feature: domain Description: AAA_1 0 Location: 1 8301 91 -1 831 091 bp Feature: gene Location: 1831161-1832987 bp Ori: CP040368.1_1831161_1832987_- Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1831461-1832160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 831 461 -1 8321 60 bp Feature: gene Location: 1833732-1835234 bp Ori: CP040368.1_1833732_1835234_- Feature: domain Description: AAA_10 Location: 1835061-1835232 bp Feature: domain Description: AAA_1 0 Location: 1 835061 -1 835232 bp Feature: gene Location: 1835221-1835610 bp Ori: CP040368.1_1835221_1835610_- Feature: domain Description: TcpE Location: 1835239-1835539 bp Feature: domain Description: TcpE Location: 1 835239-1 835539 bp Feature: gene Location: 1838503-1839003 bp Ori: CP040368.1_1838503_1839003_- Feature: domain Description: ArdA Location: 1838521-1838992 bp Feature: domain Description: ArdA Location: 1 838521 -1 838992 bp Feature: gene Location: 1839016-1839240 bp Feature: gene Location: 1839344-1841254 bp Ori: CP040368.1_1839344_1841254_- Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1839677-1840415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 839677-1 84041 5 bp Feature: domain Description: HNHc Note: nucleases Location: 1840970-1841135 bp Feature: domain Description: HNHc Note: nucleases Location: 1 840970-1 841 1 35 bp Feature: gene Location: 1842000-1842137 bp Ori: CP040368.1_1842000_1842137_- Feature: domain Description: DUF3789 Location: 1842027-1842120 bp Feature: domain Description: DUF3789 Location: 1 842027-1 8421 20 bp Feature: gene Location: 1842134-1843318 bp Ori: CP040368.1_1842134_1843318_- Feature: domain Description: HTH_XRE Location: 1842164-1842308 bp Feature: domain Description: HTH_XRE Location: 1 8421 64-1 842308 bp Feature: domain Description: Rol_Rep_N Location: 1842341-1842605 bp Feature: domain Description: Rol_Rep_N Location: 1 842341 -1 842605 bp Feature: domain Description: Rep_trans Location: 1842629-1843241 bp Feature: domain Description: Rep_trans Location: 1 842629-1 843241 bp Feature: gene Location: 2716138-2717397 bp Ori: CP040368.1_2716138_2717397_- Feature: domain Description: PRK09290 Location: 2716144-2717389 bp Feature: domain Description: PRK09290 Location: 271 61 44-271 7389 bp Feature: gene Location: 2717513-2717827 bp Ori: CP040368.1_2717513_2717827_- Feature: domain Description: AlbA_2 Location: 2717552-2717723 bp Feature: domain Description: AlbA_2 Location: 271 7552-271 7723 bp Feature: gene Location: 2717973-2719458 bp Ori: CP040368.1_2717973_2719458_- Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2718381-2718786 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 271 8381 -271 8786 bp Feature: gene Location: 2719636-2720115 bp Ori: CP040368.1_2719636_2720115_- Feature: domain Description: DUF3841 Location: 2719645-2720020 bp Feature: domain Description: DUF3841 Location: 271 9645-2720020 bp Feature: gene Location: 2720491-2720736 bp Ori: CP040368.1_2720491_2720736_- Feature: domain Description: HTH_XRE Location: 2720542-2720728 bp Feature: domain Description: HTH_XRE Location: 2720542-2720728 bp Sorry, your 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Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846), DUF3789 (pfam12664), PRK09290 (allantoate amidohydrolase; Reviewed)
AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)

Seq: CP040369.1 Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence (258646 bp)
Overview 1 RT 1: 24694-30547 bp Neighborhood of RT #1 [24694, 30666] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 24694-26388 bp Ori: CP040369.1_24694_26388_+ Feature: domain Description: VirB4 Location: 25012-25696 bp Feature: domain Description: VirB4 Location: 2 5012 -2 5696 bp Feature: gene Location: 26656-26889 bp Feature: gene Location: 27076-28953 bp Ori: CP040369.1_27076_28953_+ Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27391-28129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7391-2 812 9 bp Feature: domain Description: HNHc Note: nucleases Location: 28687-28840 bp Feature: domain Description: HNHc Note: nucleases Location: 2 8687-2 8840 bp Feature: gene Location: 29084-29461 bp Feature: gene Location: 29461-30666 bp Ori: CP040369.1_29461_30666_+ Feature: domain Description: Glucosaminidase Location: 29737-30133 bp Feature: domain Description: Glucosaminidase Location: 2 9737-30133 bp Feature: domain Description: Peptidase_M23 Location: 30310-30547 bp Feature: domain Description: Peptidase_M2 3 Location: 30310-30547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)