myRT

myRT report for GCA_005577435.1_ASM557743v1

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Seq: CP040396.1 Paenibacillus sp. HB172198 chromosome, complete genome (4475055 bp)
Overview 1 RT 1: 146464-151760 bp 2 RT 2: 273613-282412 bp 3 RT 3: 670707-677011 bp 4 RT 4: 775987-780839 bp 5 RT 5: 1614810-1625731 bp 6 RT 6: 2015738-2020344 bp 7 RT 7: 2570879-2576639 bp 8 RT 8: 2863718-2867910 bp 9 RT 9: 3135755-3140710 bp 10 RT 10: 3332605-3337315 bp 11 RT 11: 3480822-3485785 bp 12 RT 12: 3730597-3736211 bp 13 RT 13: 4315674-4327829 bp Neighborhood of RT #1 [146464, 151780] Acyl_transf_3 RVT-GII GIIM hisZ hisG Neighborhood of RT #2 [273613, 282462] sulfatase_like sulfatase_like ebgA RVT-GII GIIM 2A51 DUF4181 Neighborhood of RT #3 [670707, 677085] ABC_cobalt_CbiO_domain1 ABC_cobalt_CbiO_domain1 DUF772 RVT-GII GIIM CcmA EcsB Neighborhood of RT #4 [775987, 780871] YsdA Usp RVT-GII GIIM PurE PurK Neighborhood of RT #5 [1614810, 1625820] addB_Gpos addA_Gpos RVT-GII Intron_maturas2 addA_Gpos addA_Gpos sbcd SbcD_C Neighborhood of RT #6 [2015738, 2020344] PRK06545 RVT-GII GIIM RpoE Neighborhood of RT #7 [2570879, 2576653] MDR_yhfp_like RVT-GII GIIM PRK09243 PncA Neighborhood of RT #8 [2863718, 2867915] RVT-GII GIIM 7tm_ASR-like CspC Neighborhood of RT #9 [3135755, 3140754] SEC-C SseA RVT-Retrons HTH_3 PHA02517 Neighborhood of RT #10 [3332605, 3337317] DadA RVT-GII GIIM YjfL Neighborhood of RT #11 [3480822, 3485832] groEL groES RVT-GII GIIM TatC Neighborhood of RT #12 [3730597, 3736211] P-type_ATPase_HM_ZosA_PfeT-like RVT-GII GIIM PRK09279 Neighborhood of RT #13 [4315674, 4327918] dCache_1 YesM RVT-GII GIIM UgpE UgpA SBP_bac_8 RVT-GII GIIM PRK00029 BcsA Feature: gene Location: 146464-147690 bp Ori: QCT00869.1 Feature: domain Description: Acyl_transf_3 Location: 146500-147541 bp Feature: domain Description: Acyl_transf_3 Location: 1 46500-1 47541 bp Feature: gene Location: 147954-148115 bp Feature: gene Location: 148368-149558 bp Ori: QCT00871.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148566-149199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48566-1 491 99 bp Feature: domain Description: GIIM Note: maturase Location: 149292-149496 bp Feature: domain Description: GIIM Note: maturase Location: 1 49292-1 49496 bp Feature: gene Location: 149913-151112 bp Ori: QCT00872.1 Feature: domain Description: hisZ Location: 149934-151029 bp Feature: domain Description: hisZ Location: 1 49934-1 51 029 bp Feature: gene Location: 151142-151780 bp Ori: QCT00873.1 Feature: domain Description: hisG Location: 151151-151760 bp Feature: domain Description: hisG Location: 1 51 1 51 -1 51 760 bp Feature: gene Location: 273613-275178 bp Ori: QCT00972.1 Feature: domain Description: sulfatase_like Location: 273634-274840 bp Feature: domain Description: sulfatase_like Location: 273634-274840 bp Feature: domain Description: sulfatase_like Location: 274897-275011 bp Feature: domain Description: sulfatase_like Location: 274897-27501 1 bp Feature: gene Location: 275339-278356 bp Ori: QCT00973.1 Feature: domain Description: ebgA Location: 275357-278342 bp Feature: domain Description: ebgA Location: 275357-278342 bp Feature: gene Location: 278945-280237 bp Ori: QCT00974.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279245-279878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279245-279878 bp Feature: domain Description: GIIM Note: maturase Location: 280007-280175 bp Feature: domain Description: GIIM Note: maturase Location: 280007-2801 75 bp Feature: gene Location: 280635-281849 bp Ori: QCT00975.1 Feature: domain Description: 2A51 Location: 280722-281829 bp Feature: domain Description: 2A51 Location: 280722-281 829 bp Feature: gene Location: 282070-282462 bp Ori: QCT00976.1 Feature: domain Description: DUF4181 Location: 282175-282412 bp Feature: domain Description: DUF41 81 Location: 2821 75-28241 2 bp Feature: gene Location: 670707-672194 bp Ori: QCT01339.1 Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 670746-671382 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 670746-671 382 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 671514-672156 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 671 51 4-6721 56 bp Feature: gene Location: 672603-672797 bp Ori: QCT01340.1 Feature: domain Description: DUF772 Location: 672714-672795 bp Feature: domain Description: DUF772 Location: 67271 4-672795 bp Feature: gene Location: 673492-674784 bp Ori: QCT01341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673792-674425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673792-674425 bp Feature: domain Description: GIIM Note: maturase Location: 674554-674722 bp Feature: domain Description: GIIM Note: maturase Location: 674554-674722 bp Feature: gene Location: 675030-675782 bp Ori: QCT01342.1 Feature: domain Description: CcmA Location: 675132-675738 bp Feature: domain Description: CcmA Location: 6751 32-675738 bp Feature: gene Location: 675793-677085 bp Ori: QCT01343.1 Feature: domain Description: EcsB Location: 675868-677011 bp Feature: domain Description: EcsB Location: 675868-67701 1 bp Feature: gene Location: 775987-776250 bp Ori: QCT01422.1 Feature: domain Description: YsdA Location: 775996-776233 bp Feature: domain Description: YsdA Location: 775996-776233 bp Feature: gene Location: 776348-776785 bp Ori: QCT01423.1 Feature: domain Description: Usp Location: 776357-776780 bp Feature: domain Description: Usp Location: 776357-776780 bp Feature: gene Location: 777293-778657 bp Ori: QCT01424.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777665-778298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777665-778298 bp Feature: domain Description: GIIM Note: maturase Location: 778391-778595 bp Feature: domain Description: GIIM Note: maturase Location: 778391 -778595 bp Feature: gene Location: 779205-779690 bp Ori: QCT01425.1 Feature: domain Description: PurE Location: 779214-779679 bp Feature: domain Description: PurE Location: 77921 4-779679 bp Feature: gene Location: 779687-780871 bp Ori: QCT01426.1 Feature: domain Description: PurK Location: 779744-780839 bp Feature: domain Description: PurK Location: 779744-780839 bp Feature: gene Location: 1614810-1618301 bp Ori: QCT02171.1 Feature: domain Description: addB_Gpos Location: 1614816-1618287 bp Feature: domain Description: addB_Gpos Location: 1 61 481 6-1 61 8287 bp Feature: gene Location: 1618298-1619653 bp Ori: QCT02172.1 Feature: domain Description: addA_Gpos Location: 1618337-1619645 bp Feature: domain Description: addA_Gpos Location: 1 61 8337-1 61 9645 bp Feature: gene Location: 1620238-1621650 bp Ori: QCT02173.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1620514-1621093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 62051 4-1 621 093 bp Feature: domain Description: Intron_maturas2 Location: 1621216-1621483 bp Feature: domain Description: Intron_maturas2 Location: 1 621 21 6-1 621 483 bp Feature: gene Location: 1621711-1624575 bp Ori: QCT02174.1 Feature: domain Description: addA_Gpos Location: 1621783-1622614 bp Feature: domain Description: addA_Gpos Location: 1 621 783-1 62261 4 bp Feature: domain Description: addA_Gpos Location: 1622785-1624570 bp Feature: domain Description: addA_Gpos Location: 1 622785-1 624570 bp Feature: gene Location: 1624642-1625820 bp Ori: QCT02175.1 Feature: domain Description: sbcd Location: 1624645-1625392 bp Feature: domain Description: sbcd Location: 1 624645-1 625392 bp Feature: domain Description: SbcD_C Location: 1625458-1625731 bp Feature: domain Description: SbcD_C Location: 1 625458-1 625731 bp Feature: gene Location: 2015738-2016856 bp Ori: QCT02576.1 Feature: domain Description: PRK06545 Location: 2015777-2016836 bp Feature: domain Description: PRK06545 Location: 201 5777-201 6836 bp Feature: gene Location: 2017241-2017399 bp Feature: gene Location: 2017477-2018841 bp Ori: QCT02578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2017849-2018482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 7849-201 8482 bp Feature: domain Description: GIIM Note: maturase Location: 2018575-2018779 bp Feature: domain Description: GIIM Note: maturase Location: 201 8575-201 8779 bp Feature: gene Location: 2019146-2019739 bp Ori: QCT02579.1 Feature: domain Description: RpoE Location: 2019158-2019689 bp Feature: domain Description: RpoE Location: 201 91 58-201 9689 bp Feature: gene Location: 2019721-2020344 bp Feature: gene Location: 2570879-2571427 bp Feature: gene Location: 2571444-2572448 bp Ori: QCT03125.1 Feature: domain Description: MDR_yhfp_like Location: 2571465-2572443 bp Feature: domain Description: MDR_yhfp_like Location: 2571 465-2572443 bp Feature: gene Location: 2572722-2574086 bp Ori: QCT03126.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2573094-2573727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2573094-2573727 bp Feature: domain Description: GIIM Note: maturase Location: 2573820-2574024 bp Feature: domain Description: GIIM Note: maturase Location: 2573820-2574024 bp Feature: gene Location: 2574584-2576053 bp Ori: QCT03127.1 Feature: domain Description: PRK09243 Location: 2574596-2575979 bp Feature: domain Description: PRK09243 Location: 2574596-2575979 bp Feature: gene Location: 2576111-2576653 bp Ori: QCT03128.1 Feature: domain Description: PncA Location: 2576114-2576639 bp Feature: domain Description: PncA Location: 25761 1 4-2576639 bp Feature: gene Location: 2863718-2863894 bp Feature: gene Location: 2863866-2864102 bp Feature: gene Location: 2864857-2866248 bp Ori: QCT03409.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2865199-2865817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28651 99-286581 7 bp Feature: domain Description: GIIM Note: maturase Location: 2865868-2866081 bp Feature: domain Description: GIIM Note: maturase Location: 2865868-2866081 bp Feature: gene Location: 2866736-2867470 bp Ori: QCT03410.1 Feature: domain Description: 7tm_ASR-like Location: 2866751-2867399 bp Feature: domain Description: 7tm_ASR-like Location: 2866751 -2867399 bp Feature: gene Location: 2867715-2867915 bp Ori: QCT03411.1 Feature: domain Description: CspC Location: 2867718-2867910 bp Feature: domain Description: CspC Location: 286771 8-286791 0 bp Feature: gene Location: 3135755-3136273 bp Ori: QCT03675.1 Feature: domain Description: SEC-C Location: 3135779-3135830 bp Feature: domain Description: SEC-C Location: 31 35779-31 35830 bp Feature: gene Location: 3136314-3137150 bp Ori: QCT03676.1 Feature: domain Description: SseA Location: 3136323-3137145 bp Feature: domain Description: SseA Location: 31 36323-31 371 45 bp Feature: gene Location: 3137514-3138479 bp Ori: QCT03677.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3137664-3138210 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 37664-31 3821 0 bp Feature: gene Location: 3138454-3138702 bp Ori: QCT03678.1 Feature: domain Description: HTH_3 Location: 3138457-3138559 bp Feature: domain Description: HTH_3 Location: 31 38457-31 38559 bp Feature: gene Location: 3139912-3140754 bp Ori: QCT03679.1 Feature: domain Description: PHA02517 Location: 3140005-3140710 bp Feature: domain Description: PHA0251 7 Location: 31 40005-31 4071 0 bp Feature: gene Location: 3332605-3332838 bp Feature: gene Location: 3332967-3334196 bp Ori: QCT03892.1 Feature: domain Description: DadA Location: 3333054-3334176 bp Feature: domain Description: DadA Location: 3333054-33341 76 bp Feature: gene Location: 3334306-3335670 bp Ori: QCT03893.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3334678-3335311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3334678-333531 1 bp Feature: domain Description: GIIM Note: maturase Location: 3335404-3335608 bp Feature: domain Description: GIIM Note: maturase Location: 3335404-3335608 bp Feature: gene Location: 3336176-3336733 bp Feature: gene Location: 3336898-3337317 bp Ori: QCT03895.1 Feature: domain Description: YjfL Location: 3336937-3337315 bp Feature: domain Description: YjfL Location: 3336937-333731 5 bp Feature: gene Location: 3480822-3482450 bp Ori: QCT04034.1 Feature: domain Description: groEL Location: 3480825-3482439 bp Feature: domain Description: groEL Location: 3480825-3482439 bp Feature: gene Location: 3482516-3482797 bp Ori: QCT04035.1 Feature: domain Description: groES Location: 3482519-3482792 bp Feature: domain Description: groES Location: 348251 9-3482792 bp Feature: gene Location: 3483201-3484565 bp Ori: QCT04036.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3483573-3484206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3483573-3484206 bp Feature: domain Description: GIIM Note: maturase Location: 3484302-3484503 bp Feature: domain Description: GIIM Note: maturase Location: 3484302-3484503 bp Feature: gene Location: 3484651-3484803 bp Feature: gene Location: 3485056-3485832 bp Ori: QCT04038.1 Feature: domain Description: TatC Location: 3485071-3485785 bp Feature: domain Description: TatC Location: 3485071 -3485785 bp Feature: gene Location: 3730597-3730737 bp Feature: gene Location: 3730705-3732690 bp Ori: QCT04284.1 Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 3730828-3732679 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 3730828-3732679 bp Feature: gene Location: 3733013-3734377 bp Ori: QCT04285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3733385-3734018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3733385-373401 8 bp Feature: domain Description: GIIM Note: maturase Location: 3734111-3734315 bp Feature: domain Description: GIIM Note: maturase Location: 37341 1 1 -373431 5 bp Feature: gene Location: 3734907-3736088 bp Ori: QCT04286.1 Feature: domain Description: PRK09279 Location: 3735138-3735441 bp Feature: domain Description: PRK09279 Location: 37351 38-3735441 bp Feature: gene Location: 3736095-3736211 bp Feature: gene Location: 4315674-4317476 bp Ori: QCT04771.1 Feature: domain Description: dCache_1 Location: 4315785-4316439 bp Feature: domain Description: dCache_1 Location: 431 5785-431 6439 bp Feature: domain Description: YesM Location: 4316571-4317429 bp Feature: domain Description: YesM Location: 431 6571 -431 7429 bp Feature: gene Location: 4317503-4317631 bp Feature: gene Location: 4317647-4319011 bp Ori: QCT04773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4318019-4318652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 801 9-431 8652 bp Feature: domain Description: GIIM Note: maturase Location: 4318745-4318949 bp Feature: domain Description: GIIM Note: maturase Location: 431 8745-431 8949 bp Feature: gene Location: 4319500-4320333 bp Ori: QCT04774.1 Feature: domain Description: UgpE Location: 4319518-4320328 bp Feature: domain Description: UgpE Location: 431 951 8-4320328 bp Feature: gene Location: 4320333-4321175 bp Ori: QCT04775.1 Feature: domain Description: UgpA Location: 4320360-4321170 bp Feature: domain Description: UgpA Location: 4320360-4321 1 70 bp Feature: gene Location: 4321266-4322687 bp Ori: QCT04776.1 Feature: domain Description: SBP_bac_8 Location: 4321479-4322487 bp Feature: domain Description: SBP_bac_8 Location: 4321 479-4322487 bp Feature: gene Location: 4322936-4324300 bp Ori: QCT04777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4323308-4323941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4323308-4323941 bp Feature: domain Description: GIIM Note: maturase Location: 4324034-4324238 bp Feature: domain Description: GIIM Note: maturase Location: 4324034-4324238 bp Feature: gene Location: 4324811-4326277 bp Ori: QCT04778.1 Feature: domain Description: PRK00029 Location: 4324838-4326272 bp Feature: domain Description: PRK00029 Location: 4324838-4326272 bp Feature: gene Location: 4326494-4327918 bp Ori: QCT04779.1 Feature: domain Description: BcsA Location: 4326524-4327829 bp Feature: domain Description: BcsA Location: 4326524-4327829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acyl_transf_3 (pfam01757), RVT-GII, GIIM (pfam08388), hisZ (PRK12295), hisG (TIGR00070), sulfatase_like (cd16156), ebgA (PRK10340), 2A51 (TIGR00937), DUF4181 (pfam13789), ABC_cobalt_CbiO_domain1 (cd03225)
DUF772 (pfam05598), CcmA (COG4133), EcsB (pfam05975), YsdA (COG3326), Usp (pfam00582), PurE (COG0041), PurK (COG0026), addB_Gpos (TIGR02773), addA_Gpos (TIGR02785), Intron_maturas2 (pfam01348)
sbcd (TIGR00619), SbcD_C (pfam12320), PRK06545 (prephenate dehydrogenase; Validated), RpoE (COG3343), MDR_yhfp_like (cd08289), PRK09243 (nicotinate phosphoribosyltransferase; Validated), PncA (COG1335), 7tm_ASR-like (cd15240), CspC (COG1278), SEC-C (pfam02810)
SseA (COG2897), RVT-Retrons, HTH_3 (pfam01381), PHA02517 (putative transposase OrfB; Reviewed), DadA (COG0665), YjfL (COG3766), groEL (PRK12852), groES (PRK14533), TatC (pfam00902), P-type_ATPase_HM_ZosA_PfeT-like (cd07551)
PRK09279 (pyruvate phosphate dikinase; Provisional), dCache_1 (pfam02743), YesM (COG2972), UgpE (COG0395), UgpA (COG1175), SBP_bac_8 (pfam13416), PRK00029 (YdiU family protein), BcsA (COG1215)