myRT

myRT report for GCA_005671395.1_ASM567139v1

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Seq: CP040428.1 Izhakiella sp. KSNA2 chromosome, complete genome (5182800 bp)
Overview 1 RT 1: 301984-308015 bp 2 RT 2: 2110329-2120838 bp 3 RT 3: 2263619-2269730 bp 4 RT 4: 5122358-5126947 bp Neighborhood of RT #1 [301984, 308161] HTH_35 RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #2 [2110329, 2120838] IAT_beta Big_2 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 YacL RVT_N RVT-GII GIIM IS285 Neighborhood of RT #3 [2263619, 2269735] YjiN PRK09692 RVT-UG7 Psu Neighborhood of RT #4 [5122358, 5126947] AIPR PHA02517 RVT-GII GIIM Feature: gene Location: 301984-302205 bp Feature: domain Description: HTH_35 Location: 301999-302194 bp Feature: domain Description: HTH_35 Location: 301 999-3021 94 bp Feature: gene Location: 302202-302663 bp Feature: gene Location: 302982-306197 bp Ori: QCT18357.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 303513-304002 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30351 3-304002 bp Feature: domain Description: nitrilase Location: 305511-306108 bp Feature: domain Description: nitrilase Location: 30551 1 -3061 08 bp Feature: gene Location: 306487-307245 bp Ori: QCT22569.1 Feature: domain Description: AbiEi_3_N Location: 306493-306736 bp Feature: domain Description: AbiEi_3_N Location: 306493-306736 bp Feature: domain Description: AbiEi_3 Location: 306751-307204 bp Feature: domain Description: AbiEi_3 Location: 306751 -307204 bp Feature: gene Location: 307232-308161 bp Ori: QCT18358.1 Feature: domain Description: AbiEii Location: 307271-308015 bp Feature: domain Description: AbiEii Location: 307271 -30801 5 bp Feature: gene Location: 2110329-2116943 bp Ori: QCT19907.1 Feature: domain Description: IAT_beta Location: 2110896-2111724 bp Feature: domain Description: IAT_beta Location: 21 1 0896-21 1 1 724 bp Feature: domain Description: Big_2 Location: 2111838-2111952 bp Feature: domain Description: Big_2 Location: 21 1 1 838-21 1 1 952 bp Feature: domain Description: Big_1 Location: 2112405-2112555 bp Feature: domain Description: Big_1 Location: 21 1 2405-21 1 2555 bp Feature: domain Description: Big_1 Location: 2112723-2112858 bp Feature: domain Description: Big_1 Location: 21 1 2723-21 1 2858 bp Feature: domain Description: Big_1 Location: 2112996-2113158 bp Feature: domain Description: Big_1 Location: 21 1 2996-21 1 31 58 bp Feature: domain Description: Big_1 Location: 2113281-2113452 bp Feature: domain Description: Big_1 Location: 21 1 3281 -21 1 3452 bp Feature: domain Description: Big_1 Location: 2113584-2113758 bp Feature: domain Description: Big_1 Location: 21 1 3584-21 1 3758 bp Feature: domain Description: Big_1 Location: 2113890-2114064 bp Feature: domain Description: Big_1 Location: 21 1 3890-21 1 4064 bp Feature: domain Description: Big_1 Location: 2114196-2114370 bp Feature: domain Description: Big_1 Location: 21 1 41 96-21 1 4370 bp Feature: domain Description: Big_1 Location: 2114502-2114673 bp Feature: domain Description: Big_1 Location: 21 1 4502-21 1 4673 bp Feature: domain Description: Big_1 Location: 2114808-2114982 bp Feature: domain Description: Big_1 Location: 21 1 4808-21 1 4982 bp Feature: domain Description: Big_1 Location: 2115393-2115549 bp Feature: domain Description: Big_1 Location: 21 1 5393-21 1 5549 bp Feature: domain Description: Big_1 Location: 2115711-2115867 bp Feature: domain Description: Big_1 Location: 21 1 571 1 -21 1 5867 bp Feature: domain Description: Big_1 Location: 2116032-2116179 bp Feature: domain Description: Big_1 Location: 21 1 6032-21 1 61 79 bp Feature: domain Description: Big_1 Location: 2116347-2116494 bp Feature: domain Description: Big_1 Location: 21 1 6347-21 1 6494 bp Feature: domain Description: Big_1 Location: 2116650-2116794 bp Feature: domain Description: Big_1 Location: 21 1 6650-21 1 6794 bp Feature: gene Location: 2117132-2117227 bp Feature: domain Description: YacL Location: 2117135-2117228 bp Feature: domain Description: YacL Location: 21 1 71 35-21 1 7228 bp Feature: gene Location: 2117855-2119339 bp Ori: QCT19908.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2117909-2118152 bp Feature: domain Description: RVT_N Location: 21 1 7909-21 1 81 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2118197-2118821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 81 97-21 1 8821 bp Feature: domain Description: GIIM Note: maturase Location: 2118872-2119106 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 8872-21 1 91 06 bp Feature: gene Location: 2119435-2120643 bp Ori: QCT19909.1 Feature: domain Description: IS285 Location: 2119468-2120632 bp Feature: domain Description: IS285 Location: 21 1 9468-21 20632 bp Feature: gene Location: 2120647-2120838 bp Feature: gene Location: 2263619-2264899 bp Ori: QCT20035.1 Feature: domain Description: YjiN Location: 2263622-2264873 bp Feature: domain Description: YjiN Location: 2263622-2264873 bp Feature: gene Location: 2265315-2266499 bp Feature: domain Description: PRK09692 Location: 2265321-2266476 bp Feature: domain Description: PRK09692 Location: 2265321 -2266476 bp Feature: gene Location: 2266492-2268120 bp Ori: QCT20036.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2266900-2267329 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2266900-2267329 bp Feature: gene Location: 2268117-2268857 bp Feature: gene Location: 2269169-2269735 bp Ori: QCT20038.1 Feature: domain Description: Psu Location: 2269190-2269730 bp Feature: domain Description: Psu Location: 22691 90-2269730 bp Feature: gene Location: 5122358-5124142 bp Ori: QCT22501.1 Feature: domain Description: AIPR Location: 5123165-5123903 bp Feature: domain Description: AIPR Location: 51 231 65-51 23903 bp Feature: gene Location: 5124220-5124678 bp Feature: domain Description: PHA02517 Location: 5124223-5124670 bp Feature: domain Description: PHA0251 7 Location: 51 24223-51 24670 bp Feature: gene Location: 5124759-5126282 bp Ori: QCT22502.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5125032-5125764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 25032-51 25764 bp Feature: domain Description: GIIM Note: maturase Location: 5125836-5126037 bp Feature: domain Description: GIIM Note: maturase Location: 51 25836-51 26037 bp Feature: gene Location: 5126236-5126661 bp Feature: gene Location: 5126576-5126947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_35 (pfam13693), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), IAT_beta (pfam11924), Big_2 (pfam02368), Big_1 (pfam02369), YacL (COG3112)
RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), IS285 (COG3328), YjiN (COG2733), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455), AIPR (pfam10592), PHA02517 (putative transposase OrfB; Reviewed)