myRT

myRT report for GCA_005706655.1_ASM570665v1

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Seq: CP036555.1 Bacteroides fragilis strain CCUG4856T chromosome, complete genome (5205133 bp)
Overview 1 RT 1: 519491-522664 bp 2 RT 2: 2129560-2138518 bp 3 RT 3: 3400979-3405977 bp 4 RT 4: 4814750-4821481 bp Neighborhood of RT #1 [519491, 522664] NHL 7WD40 RVT_N RVT-GII RVT-GII HTH_28 Neighborhood of RT #2 [2129560, 2138526] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #3 [3400979, 3406003] AAT_like Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons HTH_17 Neighborhood of RT #4 [4814750, 4821528] SLATT_5 COG2865 RVT-UG5 Gph LbH_MAT_GAT Feature: gene Location: 519491-520546 bp Ori: QCT76333.1 Feature: domain Description: NHL Location: 519713-520079 bp Feature: domain Description: NHL Location: 51 971 3-520079 bp Feature: domain Description: 7WD40 Location: 520130-520511 bp Feature: domain Description: 7WD40 Location: 5201 30-52051 1 bp Feature: gene Location: 521119-521382 bp Feature: gene Location: 521369-521746 bp Ori: QCT76335.1 Feature: domain Description: RVT_N Location: 521372-521597 bp Feature: domain Description: RVT_N Location: 521 372-521 597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521651-521720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 651 -521 720 bp Feature: gene Location: 521724-521921 bp Ori: QCT76336.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521727-521919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 727-521 91 9 bp Feature: gene Location: 522042-522332 bp Ori: QCT76337.1 Feature: domain Description: HTH_28 Location: 522066-522213 bp Feature: domain Description: HTH_28 Location: 522066-52221 3 bp Feature: gene Location: 522476-522664 bp Feature: gene Location: 2129560-2131749 bp Ori: QCT77551.1 Feature: domain Description: GlnA3 Location: 2129635-2131747 bp Feature: domain Description: GlnA3 Location: 21 29635-21 31 747 bp Feature: gene Location: 2131989-2134208 bp Feature: gene Location: 2134415-2135527 bp Ori: QCT77553.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2134730-2135279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 34730-21 35279 bp Feature: gene Location: 2135669-2137462 bp Ori: QCT77554.1 Feature: domain Description: rpsA Location: 2135747-2137355 bp Feature: domain Description: rpsA Location: 21 35747-21 37355 bp Feature: gene Location: 2137612-2138526 bp Ori: QCT77555.1 Feature: domain Description: RNase_Z Location: 2137627-2138518 bp Feature: domain Description: RNase_Z Location: 21 37627-21 3851 8 bp Feature: gene Location: 3400979-3402295 bp Ori: QCT78619.1 Feature: domain Description: AAT_like Location: 3401120-3402263 bp Feature: domain Description: AAT_like Location: 3401 1 20-3402263 bp Feature: gene Location: 3402786-3404009 bp Ori: QCT78620.1 Feature: domain Description: Arm-DNA-bind_5 Location: 3402825-3403086 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3402825-3403086 bp Feature: domain Description: Phage_int_SAM_5 Location: 3403125-3403428 bp Feature: domain Description: Phage_int_SAM_5 Location: 34031 25-3403428 bp Feature: domain Description: INTN1_C_like Location: 3403479-3403968 bp Feature: domain Description: INTN1 _C_like Location: 3403479-3403968 bp Feature: gene Location: 3404018-3404866 bp Ori: QCT78621.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3404177-3404699 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34041 77-3404699 bp Feature: gene Location: 3404890-3405120 bp Feature: gene Location: 3405710-3406003 bp Ori: QCT78623.1 Feature: domain Description: HTH_17 Location: 3405833-3405977 bp Feature: domain Description: HTH_1 7 Location: 3405833-3405977 bp Feature: gene Location: 4814750-4815478 bp Ori: QCT79798.1 Feature: domain Description: SLATT_5 Location: 4814876-4815443 bp Feature: domain Description: SLATT_5 Location: 481 4876-481 5443 bp Feature: gene Location: 4815639-4817018 bp Ori: QCT79799.1 Feature: domain Description: COG2865 Location: 4815651-4817007 bp Feature: domain Description: COG2865 Location: 481 5651 -481 7007 bp Feature: gene Location: 4817023-4820025 bp Ori: QCT79800.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4817551-4818037 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 481 7551 -481 8037 bp Feature: gene Location: 4820289-4820927 bp Ori: QCT79801.1 Feature: domain Description: Gph Location: 4820292-4820919 bp Feature: domain Description: Gph Location: 4820292-482091 9 bp Feature: gene Location: 4820905-4821528 bp Ori: QCT79802.1 Feature: domain Description: LbH_MAT_GAT Location: 4820944-4821481 bp Feature: domain Description: LbH_MAT_GAT Location: 4820944-4821 481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518), GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), AAT_like (cd00609)
Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728), SLATT_5 (pfam18160), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG5, Gph (COG0546), LbH_MAT_GAT (cd03357)