myRT

myRT report for GCA_005844005.1_ASM584400v1

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Seq: CP040460.1 Pseudomonas stutzeri strain PheN2 chromosome, complete genome (3936412 bp)
Overview 1 RT 1: 1140772-1150092 bp 2 RT 2: 1340055-1348022 bp 3 RT 3: 3844399-3850995 bp Neighborhood of RT #1 [1140772, 1150253] COG4447 COG1033 RVT-GII GIIM mtnA PRK05560 Neighborhood of RT #2 [1340055, 1348036] PRK00153 PRK07994 RVT_N RVT-GII YkfC HNHc PRK00257 PRK01766 Neighborhood of RT #3 [3844399, 3850997] PRK11819 PRK13034 RVT-GII GIIM PRK11537 YbdD Feature: gene Location: 1140772-1141755 bp Ori: QCT99011.1 Feature: domain Description: COG4447 Location: 1140790-1141750 bp Feature: domain Description: COG4447 Location: 1 1 40790-1 1 41 750 bp Feature: gene Location: 1141773-1144151 bp Ori: QCT96534.1 Feature: domain Description: COG1033 Location: 1141809-1144107 bp Feature: domain Description: COG1 033 Location: 1 1 41 809-1 1 441 07 bp Feature: gene Location: 1144631-1146052 bp Ori: QCT96535.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144988-1145603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 44988-1 1 45603 bp Feature: domain Description: GIIM Note: maturase Location: 1145660-1145873 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 45660-1 1 45873 bp Feature: gene Location: 1146218-1147294 bp Ori: QCT96536.1 Gene: mtnA Feature: domain Description: mtnA Location: 1146248-1147277 bp Feature: domain Description: mtnA Location: 1 1 46248-1 1 47277 bp Feature: gene Location: 1147446-1150253 bp Ori: QCT96537.1 Gene: gyrA Feature: domain Description: PRK05560 Location: 1147464-1150092 bp Feature: domain Description: PRK05560 Location: 1 1 47464-1 1 50092 bp Feature: gene Location: 1340055-1340381 bp Ori: QCT96698.1 Feature: domain Description: PRK00153 Location: 1340061-1340373 bp Feature: domain Description: PRK001 53 Location: 1 340061 -1 340373 bp Feature: gene Location: 1340403-1342391 bp Ori: QCT96699.1 Feature: domain Description: PRK07994 Location: 1340406-1342374 bp Feature: domain Description: PRK07994 Location: 1 340406-1 342374 bp Feature: gene Location: 1342541-1344280 bp Ori: QCT96700.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1342601-1342844 bp Feature: domain Description: RVT_N Location: 1 342601 -1 342844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342892-1343543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342892-1 343543 bp Feature: domain Description: YkfC Location: 1343738-1343921 bp Feature: domain Description: YkfC Location: 1 343738-1 343921 bp Feature: domain Description: HNHc Note: nucleases Location: 1344077-1344221 bp Feature: domain Description: HNHc Note: nucleases Location: 1 344077-1 344221 bp Feature: gene Location: 1345386-1346528 bp Ori: QCT96701.1 Gene: pdxB Feature: domain Description: PRK00257 Location: 1345389-1346520 bp Feature: domain Description: PRK00257 Location: 1 345389-1 346520 bp Feature: gene Location: 1346648-1348036 bp Ori: QCT96702.1 Feature: domain Description: PRK01766 Location: 1346675-1348022 bp Feature: domain Description: PRK01 766 Location: 1 346675-1 348022 bp Feature: gene Location: 3844399-3846066 bp Ori: QCT98879.1 Gene: ettA Feature: domain Description: PRK11819 Location: 3844402-3846061 bp Feature: domain Description: PRK1 1 81 9 Location: 3844402-3846061 bp Feature: gene Location: 3846319-3847572 bp Ori: QCT98880.1 Feature: domain Description: PRK13034 Location: 3846334-3847564 bp Feature: domain Description: PRK1 3034 Location: 3846334-3847564 bp Feature: gene Location: 3848050-3849471 bp Ori: QCT98881.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3848407-3849022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3848407-3849022 bp Feature: domain Description: GIIM Note: maturase Location: 3849079-3849292 bp Feature: domain Description: GIIM Note: maturase Location: 3849079-3849292 bp Feature: gene Location: 3849665-3850636 bp Ori: QCT98882.1 Feature: domain Description: PRK11537 Location: 3849677-3850631 bp Feature: domain Description: PRK1 1 537 Location: 3849677-3850631 bp Feature: gene Location: 3850794-3850997 bp Ori: QCT98883.1 Feature: domain Description: YbdD Location: 3850800-3850995 bp Feature: domain Description: YbdD Location: 3850800-3850995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), COG1033 (Predicted exporter protein, RND superfamily ), RVT-GII, GIIM (pfam08388), mtnA (PRK05720), PRK05560 (DNA gyrase subunit A; Validated), PRK00153 (YbaB/EbfC family nucleoid-associated protein), PRK07994 (DNA polymerase III subunits gamma and tau; Validated), RVT_N (pfam13655), YkfC (COG3344)
HNHc (smart00507), PRK00257 (4-phosphoerythronate dehydrogenase PdxB), PRK01766 (multidrug efflux protein; Reviewed), PRK11819 (putative ABC transporter ATP-binding protein; Reviewed), PRK13034 (serine hydroxymethyltransferase; Reviewed), PRK11537 (putative GTP-binding protein YjiA; Provisional), YbdD (COG2879)

Seq: CP040459.1 Pseudomonas stutzeri strain PheN2 plasmid unnamed, complete sequence (122879 bp)
Overview 1 RT 1: 71067-79864 bp 2 RT 2: 113591-117737 bp Neighborhood of RT #1 [71067, 79884] Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 RVT-GII GIIM TrbC DsbA_DsbC_DsbG Neighborhood of RT #2 [113591, 117745] RVT-GII GIIM pNOB8_ParB_N_like MvaT_DBD Feature: gene Location: 71067-76733 bp Ori: QCT95454.1 Feature: domain Description: Big_9 Location: 71070-71325 bp Feature: domain Description: Big_9 Location: 71070-7132 5 bp Feature: domain Description: Big_9 Location: 71340-71601 bp Feature: domain Description: Big_9 Location: 71340-71601 bp Feature: domain Description: Big_9 Location: 71616-71892 bp Feature: domain Description: Big_9 Location: 71616-71892 bp Feature: domain Description: Big_9 Location: 71907-72168 bp Feature: domain Description: Big_9 Location: 71907-72 168 bp Feature: domain Description: Big_9 Location: 72183-72459 bp Feature: domain Description: Big_9 Location: 72 183-72 459 bp Feature: domain Description: Big_9 Location: 72474-72750 bp Feature: domain Description: Big_9 Location: 72 474-72 750 bp Feature: domain Description: Big_9 Location: 72771-73035 bp Feature: domain Description: Big_9 Location: 72 771-73035 bp Feature: gene Location: 76799-77130 bp Feature: gene Location: 77222-78514 bp Ori: QCT95455.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77483-78098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77483-78098 bp Feature: domain Description: GIIM Note: maturase Location: 78152-78356 bp Feature: domain Description: GIIM Note: maturase Location: 78152 -78356 bp Feature: gene Location: 78713-79057 bp Ori: QCT95456.1 Feature: domain Description: TrbC Location: 78719-78983 bp Feature: domain Description: TrbC Location: 78719-78983 bp Feature: gene Location: 79270-79884 bp Ori: QCT95510.1 Feature: domain Description: DsbA_DsbC_DsbG Location: 79285-79864 bp Feature: domain Description: DsbA_DsbC_DsbG Location: 792 85-79864 bp Feature: gene Location: 113591-113863 bp Feature: gene Location: 113963-114163 bp Feature: gene Location: 114648-116069 bp Ori: QCT95494.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115005-115620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115005-11562 0 bp Feature: domain Description: GIIM Note: maturase Location: 115677-115890 bp Feature: domain Description: GIIM Note: maturase Location: 115677-115890 bp Feature: gene Location: 116237-117130 bp Ori: QCT95495.1 Feature: domain Description: pNOB8_ParB_N_like Location: 116270-116426 bp Feature: domain Description: pNOB8_ParB_N_like Location: 1162 70-11642 6 bp Feature: gene Location: 117386-117745 bp Ori: QCT95496.1 Feature: domain Description: MvaT_DBD Location: 117617-117737 bp Feature: domain Description: MvaT_DBD Location: 117617-117737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_9 (pfam17963), RVT-GII, GIIM (pfam08388), TrbC (pfam04956), DsbA_DsbC_DsbG (cd03020), pNOB8_ParB_N_like (cd16404), MvaT_DBD (cl40688)