myRT

myRT report for GCA_005853785.1_ASM585378v1

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Seq: CP040535.1 Klebsiella pneumoniae strain CR-HvKP1 plasmid pCR-HvKP1-KPC, complete sequence (177591 bp)
Overview 1 RT 1: 26035-28914 bp 2 RT 2: 92894-97115 bp 3 RT 3: 175605-177538 bp Neighborhood of RT #1 [26035, 28943] PRK13719 RVT-GII PRK13719 TraY Neighborhood of RT #2 [92894, 97115] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #3 [175605, 177930] PRK10276 RVT-GII Feature: gene Location: 26035-26343 bp Feature: domain Description: PRK13719 Location: 26041-26332 bp Feature: domain Description: PRK1 371 9 Location: 26041 -26332 bp Feature: gene Location: 26460-26711 bp Feature: gene Location: 26711-28195 bp Ori: QCU26514.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27113-27803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 1 3-27803 bp Feature: gene Location: 28254-28622 bp Feature: domain Description: PRK13719 Location: 28260-28575 bp Feature: domain Description: PRK1 371 9 Location: 28260-28575 bp Feature: gene Location: 28773-28943 bp Ori: QCU26677.1 Feature: domain Description: TraY Location: 28776-28914 bp Feature: domain Description: TraY Location: 28776-2891 4 bp Feature: gene Location: 92894-93316 bp Ori: QCU26587.1 Feature: domain Description: DUF1380 Location: 92897-93191 bp Feature: domain Description: DUF1 380 Location: 92897-931 91 bp Feature: gene Location: 93313-93504 bp Feature: gene Location: 93818-95485 bp Ori: QCU26589.1 Gene: ltrA Feature: domain Description: RVT_N Location: 93866-94103 bp Feature: domain Description: RVT_N Location: 93866-941 03 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94154-94796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 941 54-94796 bp Feature: domain Description: GIIM Note: maturase Location: 94847-95081 bp Feature: domain Description: GIIM Note: maturase Location: 94847-95081 bp Feature: domain Description: HNHc Note: nucleases Location: 95291-95450 bp Feature: domain Description: HNHc Note: nucleases Location: 95291 -95450 bp Feature: gene Location: 96365-96622 bp Feature: gene Location: 96885-97115 bp Feature: gene Location: 175605-176036 bp Ori: QCU26671.1 Gene: umuD Feature: domain Description: PRK10276 Location: 175656-176019 bp Feature: domain Description: PRK1 0276 Location: 1 75656-1 7601 9 bp Feature: gene Location: 176195-176446 bp Feature: gene Location: 176446-177930 bp Ori: QCU26473.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176848-177538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 76848-1 77538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13719 (conjugal transfer transcriptional regulator TraJ; Provisional), RVT-GII, TraY (pfam05509), DUF1380 (pfam07128), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP040534.1 Klebsiella pneumoniae strain CR-HvKP1 plasmid pCR-HvKP1-VIR, complete sequence (177790 bp)
Overview 1 RT 1: 161306-165167 bp Neighborhood of RT #1 [161306, 165167] HHA RVT-GII INT_Cre_C Feature: gene Location: 161306-161560 bp Ori: QCU26445.1 Feature: domain Description: HHA Location: 161357-161540 bp Feature: domain Description: HHA Location: 161357-161540 bp Feature: gene Location: 161827-162078 bp Feature: gene Location: 162078-163562 bp Ori: QCU26447.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162480-163170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 480-163170 bp Feature: gene Location: 163648-164784 bp Ori: QCU26448.1 Feature: domain Description: INT_Cre_C Location: 164071-164725 bp Feature: domain Description: INT_Cre_C Location: 164071-16472 5 bp Feature: gene Location: 164850-165167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP040533.1 Klebsiella pneumoniae strain CR-HvKP1 chromosome, complete genome (5390059 bp)
Overview 1 RT 1: 1210771-1215656 bp 2 RT 2: 1374813-1377589 bp 3 RT 3: 1827185-1832057 bp 4 RT 4: 1847798-1854060 bp 5 RT 5: 2988506-2991014 bp 6 RT 6: 3068189-3072267 bp 7 RT 7: 3221409-3225508 bp 8 RT 8: 3614141-3618167 bp 9 RT 9: 3621852-3626690 bp 10 RT 10: 3710990-3716313 bp Neighborhood of RT #1 [1210771, 1215661] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1374813, 1377589] RVT-GII Neighborhood of RT #3 [1827185, 1832071] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1847798, 1854060] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [2988506, 2991014] RVT-GII Neighborhood of RT #6 [3068189, 3072267] umuC PRK10276 RVT-GII Rve Neighborhood of RT #7 [3221409, 3225519] umuC PRK10276 RVT-GII DinI Neighborhood of RT #8 [3614141, 3619051] DinI RVT-GII Phage_GPA Neighborhood of RT #9 [3621852, 3626740] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Neighborhood of RT #10 [3710990, 3716354] UvrB RVT-GII LivF Feature: gene Location: 1210771-1213155 bp Ori: QCU22332.1 Feature: domain Description: Phage_GPA Location: 1211335-1212301 bp Feature: domain Description: Phage_GPA Location: 12113 3 5-12123 01 bp Feature: gene Location: 1213385-1213636 bp Feature: gene Location: 1213636-1215120 bp Ori: QCU22334.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1214038-1214728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121403 8-1214728 bp Feature: gene Location: 1215228-1215416 bp Feature: gene Location: 1215428-1215661 bp Ori: QCU22336.1 Feature: domain Description: DinI Location: 1215473-1215656 bp Feature: domain Description: DinI Location: 1215473 -1215656 bp Feature: gene Location: 1374813-1375016 bp Feature: gene Location: 1375009-1375347 bp Feature: gene Location: 1375444-1376928 bp Ori: QCU22495.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375846-1376536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 75846-13 7653 6 bp Feature: gene Location: 1376928-1377179 bp Feature: gene Location: 1377332-1377589 bp Feature: gene Location: 1827185-1828354 bp Ori: QCU22864.1 Gene: dacD Feature: domain Description: dacD Location: 1827194-1828349 bp Feature: domain Description: dacD Location: 1827194-18283 49 bp Feature: gene Location: 1828624-1828875 bp Feature: gene Location: 1828875-1830359 bp Ori: QCU22866.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1829277-1829967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1829277-1829967 bp Feature: gene Location: 1830441-1830914 bp Ori: QCU22867.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1830444-1830903 bp Feature: domain Description: PRK10016 Location: 183 0444-183 0903 bp Feature: gene Location: 1831013-1832071 bp Ori: QCU22868.1 Feature: domain Description: YccC Location: 1831019-1832057 bp Feature: domain Description: YccC Location: 183 1019-183 2057 bp Feature: gene Location: 1847798-1848901 bp Ori: QCU22887.1 Feature: domain Description: STKc_PknB_like Location: 1847930-1848371 bp Feature: domain Description: STKc_PknB_like Location: 184793 0-18483 71 bp Feature: gene Location: 1848971-1849213 bp Feature: gene Location: 1849460-1850560 bp Ori: QCU22888.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1849643-1850171 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1849643 -1850171 bp Feature: gene Location: 1850675-1852921 bp Ori: QCU22889.1 Feature: domain Description: AAA_15 Location: 1850678-1851686 bp Feature: domain Description: AAA_15 Location: 1850678-1851686 bp Feature: gene Location: 1853830-1854060 bp Feature: gene Location: 2988506-2988790 bp Feature: gene Location: 2988804-2988875 bp Feature: gene Location: 2988868-2990352 bp Ori: QCU23925.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2989270-2989960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2989270-2989960 bp Feature: gene Location: 2990352-2990603 bp Feature: gene Location: 2990805-2991014 bp Feature: gene Location: 3068189-3069454 bp Ori: QCU24016.1 Feature: domain Description: umuC Location: 3068192-3069452 bp Feature: domain Description: umuC Location: 3 068192-3 069452 bp Feature: gene Location: 3069456-3069875 bp Ori: QCU24017.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3069459-3069870 bp Feature: domain Description: PRK10276 Location: 3 069459-3 069870 bp Feature: gene Location: 3069955-3071091 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3070009-3070699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 070009-3 070699 bp Feature: gene Location: 3071156-3071860 bp Ori: QCU24018.1 Feature: domain Description: Rve Location: 3071159-3071804 bp Feature: domain Description: Rve Location: 3 071159-3 071804 bp Feature: gene Location: 3071806-3072267 bp Feature: gene Location: 3221409-3222674 bp Ori: QCU24168.1 Feature: domain Description: umuC Location: 3221412-3222672 bp Feature: domain Description: umuC Location: 3 221412-3 222672 bp Feature: gene Location: 3222677-3223096 bp Ori: QCU24169.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3222680-3223091 bp Feature: domain Description: PRK10276 Location: 3 222680-3 223 091 bp Feature: gene Location: 3223175-3224659 bp Ori: QCU24170.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223577-3224267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 223 577-3 224267 bp Feature: gene Location: 3224659-3224910 bp Feature: gene Location: 3225277-3225519 bp Ori: QCU24172.1 Feature: domain Description: DinI Location: 3225328-3225508 bp Feature: domain Description: DinI Location: 3 2253 28-3 225508 bp Feature: gene Location: 3614141-3614446 bp Ori: QCU24522.1 Feature: domain Description: DinI Location: 3614255-3614441 bp Feature: domain Description: DinI Location: 3 614255-3 614441 bp Feature: gene Location: 3614385-3614573 bp Feature: gene Location: 3614674-3616158 bp Ori: QCU24523.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3615076-3615766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 615076-3 615766 bp Feature: gene Location: 3616158-3616409 bp Feature: gene Location: 3616637-3619051 bp Ori: QCU24525.1 Feature: domain Description: Phage_GPA Location: 3617201-3618167 bp Feature: domain Description: Phage_GPA Location: 3 617201-3 618167 bp Feature: gene Location: 3621852-3622730 bp Ori: QCU26239.1 Feature: domain Description: Phage_CI_repr Location: 3621879-3622062 bp Feature: domain Description: Phage_CI_repr Location: 3 621879-3 622062 bp Feature: domain Description: Phage_CI_repr Location: 3622191-3622383 bp Feature: domain Description: Phage_CI_repr Location: 3 622191-3 6223 83 bp Feature: domain Description: Phage_CI_C Location: 3622410-3622704 bp Feature: domain Description: Phage_CI_C Location: 3 622410-3 622704 bp Feature: gene Location: 3622742-3623686 bp Feature: gene Location: 3623785-3625269 bp Ori: QCU24534.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3624187-3624877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 624187-3 624877 bp Feature: gene Location: 3625269-3625520 bp Feature: gene Location: 3625688-3626740 bp Ori: QCU24536.1 Feature: domain Description: int Location: 3625691-3626690 bp Feature: domain Description: int Location: 3 625691-3 626690 bp Feature: gene Location: 3710990-3713011 bp Ori: QCU24613.1 Gene: uvrB Feature: domain Description: UvrB Location: 3710996-3712997 bp Feature: domain Description: UvrB Location: 3 710996-3 712997 bp Feature: gene Location: 3713222-3713473 bp Feature: gene Location: 3713473-3714957 bp Ori: QCU24615.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3713875-3714565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 713 875-3 714565 bp Feature: gene Location: 3715333-3715545 bp Feature: gene Location: 3715632-3716354 bp Ori: QCU24617.1 Feature: domain Description: LivF Location: 3715635-3716313 bp Feature: domain Description: LivF Location: 3 71563 5-3 7163 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Rve (COG3316), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), UvrB (pfam12344), LivF (COG0410)

Seq: CP040536.1 Klebsiella pneumoniae strain CR-HvKP1 plasmid pCR-HvKP1-p3, complete sequence (99717 bp)
Overview 1 RT 1: 30250-33908 bp Neighborhood of RT #1 [30250, 33910] RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 30250-30348 bp Feature: gene Location: 30386-30571 bp Feature: gene Location: 30549-32216 bp Ori: QCU26731.1 Gene: ltrA Feature: domain Description: RVT_N Location: 30597-30834 bp Feature: domain Description: RVT_N Location: 30597-30834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30885-31527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30885-31527 bp Feature: domain Description: GIIM Note: maturase Location: 31578-31812 bp Feature: domain Description: GIIM Note: maturase Location: 31578-31812 bp Feature: domain Description: HNHc Note: nucleases Location: 32022-32181 bp Feature: domain Description: HNHc Note: nucleases Location: 32022-32181 bp Feature: gene Location: 32930-33436 bp Feature: gene Location: 33383-33910 bp Ori: QCU26732.1 Feature: domain Description: PRK13732 Location: 33386-33908 bp Feature: domain Description: PRK13732 Location: 33386-33908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: CP040537.1 Klebsiella pneumoniae strain CR-HvKP1 plasmid pCR-HvKP1-p4, complete sequence (11970 bp)
Overview 1 RT 1: 9590-11575 bp Neighborhood of RT #1 [9590, 11967] RVT-GII Feature: gene Location: 9590-9835 bp Feature: gene Location: 10232-10483 bp Feature: gene Location: 10483-11967 bp Ori: QCU26831.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10885-11575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10885 -115 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII