myRT

myRT report for GCA_005854025.1_ASM585402v1

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Seq: CP040546.1 Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-VIR, complete sequence (177694 bp)
Overview 1 RT 1: 2643-6504 bp Neighborhood of RT #1 [2643, 6504] HHA RVT-GII INT_Cre_C Feature: gene Location: 2643-2897 bp Ori: QCU38498.1 Feature: domain Description: HHA Location: 2694-2877 bp Feature: domain Description: HHA Location: 2694-2877 bp Feature: gene Location: 3164-3415 bp Feature: gene Location: 3415-4899 bp Ori: QCU38500.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3817-4507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 7-4507 bp Feature: gene Location: 4985-6121 bp Ori: QCU38501.1 Feature: domain Description: INT_Cre_C Location: 5408-6062 bp Feature: domain Description: INT_Cre_C Location: 5408-6062 bp Feature: gene Location: 6187-6504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP040548.1 Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-p3, complete sequence (99717 bp)
Overview 1 RT 1: 30250-33908 bp Neighborhood of RT #1 [30250, 33910] RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 30250-30348 bp Feature: gene Location: 30386-30571 bp Feature: gene Location: 30549-32216 bp Ori: QCU38920.1 Gene: ltrA Feature: domain Description: RVT_N Location: 30597-30834 bp Feature: domain Description: RVT_N Location: 30597-30834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30885-31527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30885-3152 7 bp Feature: domain Description: GIIM Note: maturase Location: 31578-31812 bp Feature: domain Description: GIIM Note: maturase Location: 31578-31812 bp Feature: domain Description: HNHc Note: nucleases Location: 32022-32181 bp Feature: domain Description: HNHc Note: nucleases Location: 32 02 2 -32 181 bp Feature: gene Location: 32930-33436 bp Feature: gene Location: 33383-33910 bp Ori: QCU38921.1 Feature: domain Description: PRK13732 Location: 33386-33908 bp Feature: domain Description: PRK13732 Location: 33386-33908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: CP040547.1 Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-KPC, complete sequence (177587 bp)
Overview 1 RT 1: 74334-78430 bp 2 RT 2: 142506-145403 bp 3 RT 3: 169216-173418 bp Neighborhood of RT #1 [74334, 78555] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [142506, 145414] TraY PRK13719 RVT-GII PRK13719 Neighborhood of RT #3 [169216, 173435] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 74334-74564 bp Feature: gene Location: 74827-75084 bp Feature: gene Location: 75964-77631 bp Ori: QCU38738.1 Gene: ltrA Feature: domain Description: RVT_N Location: 76012-76249 bp Feature: domain Description: RVT_N Location: 76012-76249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76300-76942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763 00-76942 bp Feature: domain Description: GIIM Note: maturase Location: 76993-77227 bp Feature: domain Description: GIIM Note: maturase Location: 76993 -77227 bp Feature: domain Description: HNHc Note: nucleases Location: 77437-77596 bp Feature: domain Description: HNHc Note: nucleases Location: 7743 7-77596 bp Feature: gene Location: 77945-78136 bp Feature: gene Location: 78133-78555 bp Ori: QCU38740.1 Feature: domain Description: DUF1380 Location: 78136-78430 bp Feature: domain Description: DUF13 80 Location: 7813 6-7843 0 bp Feature: gene Location: 142506-142676 bp Ori: QCU38875.1 Feature: domain Description: TraY Location: 142509-142647 bp Feature: domain Description: TraY Location: 142509-142647 bp Feature: gene Location: 142827-143195 bp Feature: domain Description: PRK13719 Location: 142833-143148 bp Feature: domain Description: PRK13 719 Location: 14283 3 -143 148 bp Feature: gene Location: 143254-144738 bp Ori: QCU38813.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143656-144346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 656-1443 46 bp Feature: gene Location: 144738-144989 bp Feature: gene Location: 145106-145414 bp Feature: domain Description: PRK13719 Location: 145112-145403 bp Feature: domain Description: PRK13 719 Location: 145112-145403 bp Feature: gene Location: 169216-169887 bp Ori: QCU38852.1 Feature: domain Description: Plasmid_stab_B Location: 169231-169438 bp Feature: domain Description: Plasmid_stab_B Location: 16923 1-16943 8 bp Feature: domain Description: Plasmid_stab_B Location: 169543-169750 bp Feature: domain Description: Plasmid_stab_B Location: 169543 -169750 bp Feature: gene Location: 169890-170861 bp Ori: QCU38853.1 Feature: domain Description: StbA Location: 169893-170838 bp Feature: domain Description: StbA Location: 169893 -17083 8 bp Feature: gene Location: 171110-172594 bp Ori: QCU38854.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171512-172202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171512-172202 bp Feature: gene Location: 172594-172845 bp Feature: gene Location: 173004-173435 bp Ori: QCU38856.1 Gene: umuD Feature: domain Description: PRK10276 Location: 173055-173418 bp Feature: domain Description: PRK10276 Location: 173 055-173 418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), TraY (pfam05509), PRK13719 (conjugal transfer transcriptional regulator TraJ; Provisional), Plasmid_stab_B (pfam10784), StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP040545.1 Klebsiella pneumoniae strain CR-HvKP5 chromosome, complete genome (5408302 bp)
Overview 1 RT 1: 1210527-1215412 bp 2 RT 2: 1374569-1377345 bp 3 RT 3: 1828210-1833082 bp 4 RT 4: 1848823-1855085 bp 5 RT 5: 3007259-3009767 bp 6 RT 6: 3086942-3091080 bp 7 RT 7: 3239334-3243433 bp 8 RT 8: 3312165-3315154 bp 9 RT 9: 3632387-3636413 bp 10 RT 10: 3640098-3644936 bp 11 RT 11: 3729236-3734559 bp Neighborhood of RT #1 [1210527, 1215417] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1374569, 1377345] RVT-GII Neighborhood of RT #3 [1828210, 1833096] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1848823, 1855085] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3007259, 3009767] RVT-GII Neighborhood of RT #6 [3086942, 3091080] umuC PRK10276 RVT-GII Neighborhood of RT #7 [3239334, 3243444] umuC PRK10276 RVT-GII DinI Neighborhood of RT #8 [3312165, 3315180] PRK10597 RVT-GII dGTP_triPase Neighborhood of RT #9 [3632387, 3637297] DinI RVT-GII Phage_GPA Neighborhood of RT #10 [3640098, 3644986] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Neighborhood of RT #11 [3729236, 3734600] UvrB RVT-GII LivF Feature: gene Location: 1210527-1212911 bp Ori: QCU34507.1 Feature: domain Description: Phage_GPA Location: 1211091-1212057 bp Feature: domain Description: Phage_GPA Location: 1211091-1212057 bp Feature: gene Location: 1213141-1213392 bp Feature: gene Location: 1213392-1214876 bp Ori: QCU34509.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213794-1214484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1213794 -1214 4 84 bp Feature: gene Location: 1214984-1215172 bp Feature: gene Location: 1215184-1215417 bp Ori: QCU34511.1 Feature: domain Description: DinI Location: 1215229-1215412 bp Feature: domain Description: DinI Location: 1215229-12154 12 bp Feature: gene Location: 1374569-1374772 bp Feature: gene Location: 1374765-1375103 bp Feature: gene Location: 1375200-1376684 bp Ori: QCU34670.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375602-1376292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375602-1376292 bp Feature: gene Location: 1376684-1376935 bp Feature: gene Location: 1377088-1377345 bp Feature: gene Location: 1828210-1829379 bp Ori: QCU35037.1 Gene: dacD Feature: domain Description: dacD Location: 1828219-1829374 bp Feature: domain Description: dacD Location: 1828219-1829374 bp Feature: gene Location: 1829649-1829900 bp Feature: gene Location: 1829900-1831384 bp Ori: QCU35039.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1830302-1830992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1830302-1830992 bp Feature: gene Location: 1831466-1831939 bp Ori: QCU35040.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1831469-1831928 bp Feature: domain Description: PRK10016 Location: 18314 69-1831928 bp Feature: gene Location: 1832038-1833096 bp Ori: QCU35041.1 Feature: domain Description: YccC Location: 1832044-1833082 bp Feature: domain Description: YccC Location: 183204 4 -1833082 bp Feature: gene Location: 1848823-1849926 bp Ori: QCU35060.1 Feature: domain Description: STKc_PknB_like Location: 1848955-1849396 bp Feature: domain Description: STKc_PknB_like Location: 184 8955-184 9396 bp Feature: gene Location: 1849996-1850238 bp Feature: gene Location: 1850485-1851585 bp Ori: QCU35061.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1850668-1851196 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1850668-1851196 bp Feature: gene Location: 1851700-1853946 bp Ori: QCU35062.1 Feature: domain Description: AAA_15 Location: 1851703-1852711 bp Feature: domain Description: AAA_15 Location: 1851703-1852711 bp Feature: gene Location: 1854855-1855085 bp Feature: gene Location: 3007259-3007543 bp Feature: gene Location: 3007557-3007628 bp Feature: gene Location: 3007621-3009105 bp Ori: QCU36109.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3008023-3008713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3008023-3008713 bp Feature: gene Location: 3009105-3009356 bp Feature: gene Location: 3009558-3009767 bp Feature: gene Location: 3086942-3088207 bp Ori: QCU36200.1 Feature: domain Description: umuC Location: 3086945-3088205 bp Feature: domain Description: umuC Location: 308694 5-3088205 bp Feature: gene Location: 3088209-3088628 bp Ori: QCU36201.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3088212-3088623 bp Feature: domain Description: PRK10276 Location: 3088212-3088623 bp Feature: gene Location: 3088708-3090192 bp Ori: QCU36202.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3089110-3089800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3089110-3089800 bp Feature: gene Location: 3090192-3090443 bp Feature: gene Location: 3090991-3091080 bp Feature: gene Location: 3239334-3240599 bp Ori: QCU36351.1 Feature: domain Description: umuC Location: 3239337-3240597 bp Feature: domain Description: umuC Location: 3239337-324 0597 bp Feature: gene Location: 3240602-3241021 bp Ori: QCU36352.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3240605-3241016 bp Feature: domain Description: PRK10276 Location: 324 0605-324 1016 bp Feature: gene Location: 3241100-3242584 bp Ori: QCU36353.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3241502-3242192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324 1502-324 2192 bp Feature: gene Location: 3242584-3242835 bp Feature: gene Location: 3243202-3243444 bp Ori: QCU36355.1 Feature: domain Description: DinI Location: 3243253-3243433 bp Feature: domain Description: DinI Location: 324 3253-324 34 33 bp Feature: gene Location: 3312165-3312455 bp Feature: gene Location: 3312467-3312700 bp Ori: QCU36425.1 Feature: domain Description: PRK10597 Location: 3312470-3312695 bp Feature: domain Description: PRK10597 Location: 33124 70-3312695 bp Feature: gene Location: 3312779-3314175 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3313100-3313241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3313100-331324 1 bp Feature: gene Location: 3314307-3314494 bp Feature: gene Location: 3315085-3315180 bp Ori: QCU36426.1 Feature: domain Description: dGTP_triPase Location: 3315088-3315154 bp Feature: domain Description: dGTP_triPase Location: 3315088-3315154 bp Feature: gene Location: 3632387-3632692 bp Ori: QCU36704.1 Feature: domain Description: DinI Location: 3632501-3632687 bp Feature: domain Description: DinI Location: 3632501-3632687 bp Feature: gene Location: 3632631-3632819 bp Feature: gene Location: 3632920-3634404 bp Ori: QCU36705.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3633322-3634012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3633322-3634 012 bp Feature: gene Location: 3634404-3634655 bp Feature: gene Location: 3634883-3637297 bp Ori: QCU36707.1 Feature: domain Description: Phage_GPA Location: 3635447-3636413 bp Feature: domain Description: Phage_GPA Location: 36354 4 7-36364 13 bp Feature: gene Location: 3640098-3640976 bp Ori: QCU38423.1 Feature: domain Description: Phage_CI_repr Location: 3640125-3640308 bp Feature: domain Description: Phage_CI_repr Location: 364 0125-364 0308 bp Feature: domain Description: Phage_CI_repr Location: 3640437-3640629 bp Feature: domain Description: Phage_CI_repr Location: 364 04 37-364 0629 bp Feature: domain Description: Phage_CI_C Location: 3640656-3640950 bp Feature: domain Description: Phage_CI_C Location: 364 0656-364 0950 bp Feature: gene Location: 3640988-3641932 bp Feature: gene Location: 3642031-3643515 bp Ori: QCU36716.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3642433-3643123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364 24 33-364 3123 bp Feature: gene Location: 3643515-3643766 bp Feature: gene Location: 3643934-3644986 bp Ori: QCU36718.1 Feature: domain Description: int Location: 3643937-3644936 bp Feature: domain Description: int Location: 364 3937-364 4 936 bp Feature: gene Location: 3729236-3731257 bp Ori: QCU36795.1 Gene: uvrB Feature: domain Description: UvrB Location: 3729242-3731243 bp Feature: domain Description: UvrB Location: 372924 2-373124 3 bp Feature: gene Location: 3731468-3731719 bp Feature: gene Location: 3731719-3733203 bp Ori: QCU36797.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3732121-3732811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3732121-3732811 bp Feature: gene Location: 3733579-3733791 bp Feature: gene Location: 3733878-3734600 bp Ori: QCU36799.1 Feature: domain Description: LivF Location: 3733881-3734559 bp Feature: domain Description: LivF Location: 3733881-3734 559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), dGTP_triPase (TIGR01353), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), UvrB (pfam12344), LivF (COG0410)

Seq: CP040549.1 Klebsiella pneumoniae strain CR-HvKP5 plasmid pCR-HvKP5-p4, complete sequence (11970 bp)
Overview 1 RT 1: 9583-11568 bp Neighborhood of RT #1 [9583, 11960] RVT-GII Feature: gene Location: 9583-9828 bp Feature: gene Location: 10225-10476 bp Feature: gene Location: 10476-11960 bp Ori: QCU39021.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10878-11568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10878-115 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII