myRT

myRT report for GCA_005854245.1_ASM585424v1

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Seq: CP040542.1 Klebsiella pneumoniae strain CR-HvKP4 plasmid pCR-HvKP4-p3, complete sequence (99722 bp)
Overview 1 RT 1: 30255-33913 bp Neighborhood of RT #1 [30255, 33915] RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 30255-30353 bp Feature: gene Location: 30391-30576 bp Feature: gene Location: 30554-32221 bp Ori: QCU44563.1 Gene: ltrA Feature: domain Description: RVT_N Location: 30602-30839 bp Feature: domain Description: RVT_N Location: 30602-30839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30890-31532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30890-31 532 bp Feature: domain Description: GIIM Note: maturase Location: 31583-31817 bp Feature: domain Description: GIIM Note: maturase Location: 31 583-31 81 7 bp Feature: domain Description: HNHc Note: nucleases Location: 32027-32186 bp Feature: domain Description: HNHc Note: nucleases Location: 32027-321 86 bp Feature: gene Location: 32935-33441 bp Feature: gene Location: 33388-33915 bp Ori: QCU44564.1 Feature: domain Description: PRK13732 Location: 33391-33913 bp Feature: domain Description: PRK1 3732 Location: 33391 -3391 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: CP040543.1 Klebsiella pneumoniae strain CR-HvKP4 plasmid pCR-HvKP4-p4, complete sequence (11970 bp)
Overview 1 RT 1: 9572-11557 bp Neighborhood of RT #1 [9572, 11949] RVT-GII Feature: gene Location: 9572-9817 bp Feature: gene Location: 10214-10465 bp Feature: gene Location: 10465-11949 bp Ori: QCU44664.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10867-11557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10867-11557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CP040539.1 Klebsiella pneumoniae strain CR-HvKP4 chromosome, complete genome (5388721 bp)
Overview 1 RT 1: 2785476-2790361 bp 2 RT 2: 2949518-2952294 bp 3 RT 3: 3401732-3406604 bp 4 RT 4: 3422345-3428607 bp 5 RT 5: 4561138-4563646 bp 6 RT 6: 4640821-4644959 bp 7 RT 7: 4793213-4797312 bp 8 RT 8: 5186377-5190403 bp 9 RT 9: 5194088-5198926 bp 10 RT 10: 5283226-5288549 bp Neighborhood of RT #1 [2785476, 2790366] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [2949518, 2952294] RVT-GII Neighborhood of RT #3 [3401732, 3406618] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [3422345, 3428607] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [4561138, 4563646] RVT-GII Neighborhood of RT #6 [4640821, 4644959] umuC PRK10276 RVT-GII Neighborhood of RT #7 [4793213, 4797323] umuC PRK10276 RVT-GII DinI Neighborhood of RT #8 [5186377, 5191287] DinI RVT-GII Phage_GPA Neighborhood of RT #9 [5194088, 5198976] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Neighborhood of RT #10 [5283226, 5288590] UvrB RVT-GII LivF Feature: gene Location: 2785476-2787860 bp Ori: QCU41534.1 Feature: domain Description: Phage_GPA Location: 2786040-2787006 bp Feature: domain Description: Phage_GPA Location: 2786040-2787006 bp Feature: gene Location: 2788090-2788341 bp Feature: gene Location: 2788341-2789825 bp Ori: QCU41536.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2788743-2789433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2788743 -278943 3 bp Feature: gene Location: 2789933-2790121 bp Feature: gene Location: 2790133-2790366 bp Ori: QCU41538.1 Feature: domain Description: DinI Location: 2790178-2790361 bp Feature: domain Description: DinI Location: 2790178-27903 61 bp Feature: gene Location: 2949518-2949721 bp Feature: gene Location: 2949714-2950052 bp Feature: gene Location: 2950149-2951633 bp Ori: QCU41697.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950551-2951241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2950551-2951241 bp Feature: gene Location: 2951633-2951884 bp Feature: gene Location: 2952037-2952294 bp Feature: gene Location: 3401732-3402901 bp Ori: QCU42063.1 Gene: dacD Feature: domain Description: dacD Location: 3401741-3402896 bp Feature: domain Description: dacD Location: 3 401741-3 402896 bp Feature: gene Location: 3403171-3403422 bp Feature: gene Location: 3403422-3404906 bp Ori: QCU42065.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3403824-3404514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 403 824-3 404514 bp Feature: gene Location: 3404988-3405461 bp Ori: QCU42066.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 3404991-3405450 bp Feature: domain Description: PRK10016 Location: 3 404991-3 405450 bp Feature: gene Location: 3405560-3406618 bp Ori: QCU42067.1 Feature: domain Description: YccC Location: 3405566-3406604 bp Feature: domain Description: YccC Location: 3 405566-3 406604 bp Feature: gene Location: 3422345-3423448 bp Ori: QCU42086.1 Feature: domain Description: STKc_PknB_like Location: 3422477-3422918 bp Feature: domain Description: STKc_PknB_like Location: 3 422477-3 422918 bp Feature: gene Location: 3423518-3423760 bp Feature: gene Location: 3424007-3425107 bp Ori: QCU42087.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3424190-3424718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 424190-3 424718 bp Feature: gene Location: 3425222-3427468 bp Ori: QCU42088.1 Feature: domain Description: AAA_15 Location: 3425225-3426233 bp Feature: domain Description: AAA_15 Location: 3 425225-3 42623 3 bp Feature: gene Location: 3428377-3428607 bp Feature: gene Location: 4561138-4561422 bp Feature: gene Location: 4561436-4561507 bp Feature: gene Location: 4561500-4562984 bp Ori: QCU43115.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561902-4562592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561902-4562592 bp Feature: gene Location: 4562984-4563235 bp Feature: gene Location: 4563437-4563646 bp Feature: gene Location: 4640821-4642086 bp Ori: QCU43206.1 Feature: domain Description: umuC Location: 4640824-4642084 bp Feature: domain Description: umuC Location: 4640824-4642084 bp Feature: gene Location: 4642088-4642507 bp Ori: QCU43207.1 Gene: umuD Feature: domain Description: PRK10276 Location: 4642091-4642502 bp Feature: domain Description: PRK10276 Location: 4642091-4642502 bp Feature: gene Location: 4642587-4644071 bp Ori: QCU43208.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4642989-4643679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4642989-4643 679 bp Feature: gene Location: 4644071-4644322 bp Feature: gene Location: 4644870-4644959 bp Feature: gene Location: 4793213-4794478 bp Ori: QCU43357.1 Feature: domain Description: umuC Location: 4793216-4794476 bp Feature: domain Description: umuC Location: 4793 216-4794476 bp Feature: gene Location: 4794481-4794900 bp Ori: QCU43358.1 Gene: umuD Feature: domain Description: PRK10276 Location: 4794484-4794895 bp Feature: domain Description: PRK10276 Location: 4794484-4794895 bp Feature: gene Location: 4794979-4796463 bp Ori: QCU43359.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4795381-4796071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47953 81-4796071 bp Feature: gene Location: 4796463-4796714 bp Feature: gene Location: 4797081-4797323 bp Ori: QCU43361.1 Feature: domain Description: DinI Location: 4797132-4797312 bp Feature: domain Description: DinI Location: 479713 2-47973 12 bp Feature: gene Location: 5186377-5186682 bp Ori: QCU43713.1 Feature: domain Description: DinI Location: 5186491-5186677 bp Feature: domain Description: DinI Location: 5186491-5186677 bp Feature: gene Location: 5186621-5186809 bp Feature: gene Location: 5186910-5188394 bp Ori: QCU43714.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5187312-5188002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51873 12-5188002 bp Feature: gene Location: 5188394-5188645 bp Feature: gene Location: 5188873-5191287 bp Ori: QCU43716.1 Feature: domain Description: Phage_GPA Location: 5189437-5190403 bp Feature: domain Description: Phage_GPA Location: 518943 7-5190403 bp Feature: gene Location: 5194088-5194966 bp Ori: QCU44131.1 Feature: domain Description: Phage_CI_repr Location: 5194115-5194298 bp Feature: domain Description: Phage_CI_repr Location: 5194115-5194298 bp Feature: domain Description: Phage_CI_repr Location: 5194427-5194619 bp Feature: domain Description: Phage_CI_repr Location: 5194427-5194619 bp Feature: domain Description: Phage_CI_C Location: 5194646-5194940 bp Feature: domain Description: Phage_CI_C Location: 5194646-5194940 bp Feature: gene Location: 5194978-5195922 bp Feature: gene Location: 5196021-5197505 bp Ori: QCU43725.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5196423-5197113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5196423 -5197113 bp Feature: gene Location: 5197505-5197756 bp Feature: gene Location: 5197924-5198976 bp Ori: QCU43727.1 Feature: domain Description: int Location: 5197927-5198926 bp Feature: domain Description: int Location: 5197927-5198926 bp Feature: gene Location: 5283226-5285247 bp Ori: QCU43804.1 Gene: uvrB Feature: domain Description: UvrB Location: 5283232-5285233 bp Feature: domain Description: UvrB Location: 5283 23 2-528523 3 bp Feature: gene Location: 5285458-5285709 bp Feature: gene Location: 5285709-5287193 bp Ori: QCU43806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5286111-5286801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5286111-5286801 bp Feature: gene Location: 5287569-5287781 bp Feature: gene Location: 5287868-5288590 bp Ori: QCU43808.1 Feature: domain Description: LivF Location: 5287871-5288549 bp Feature: domain Description: LivF Location: 5287871-5288549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), UvrB (pfam12344), LivF (COG0410)

Seq: CP040541.1 Klebsiella pneumoniae strain CR-HvKP4 plasmid pCR-HvKP4-pKPC, complete sequence (177585 bp)
Overview 1 RT 1: 25767-29988 bp 2 RT 2: 108489-112571 bp 3 RT 3: 136493-139372 bp Neighborhood of RT #1 [25767, 29988] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [108489, 112708] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #3 [136493, 139401] PRK13719 RVT-GII PRK13719 TraY Feature: gene Location: 25767-26189 bp Ori: QCU44332.1 Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: gene Location: 26186-26377 bp Feature: gene Location: 26691-28358 bp Ori: QCU44334.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: HNHc Note: nucleases Location: 28164-28323 bp Feature: domain Description: HNHc Note: nucleases Location: 28164 -28323 bp Feature: gene Location: 29238-29495 bp Feature: gene Location: 29758-29988 bp Feature: gene Location: 108489-108920 bp Ori: QCU44414.1 Gene: umuD Feature: domain Description: PRK10276 Location: 108540-108903 bp Feature: domain Description: PRK10276 Location: 10854 0-108903 bp Feature: gene Location: 109079-109330 bp Feature: gene Location: 109330-110814 bp Ori: QCU44416.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109732-110422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109732-1104 22 bp Feature: gene Location: 111063-112034 bp Ori: QCU44417.1 Feature: domain Description: StbA Location: 111066-112011 bp Feature: domain Description: StbA Location: 111066-112011 bp Feature: gene Location: 112037-112708 bp Ori: QCU44418.1 Feature: domain Description: Plasmid_stab_B Location: 112052-112259 bp Feature: domain Description: Plasmid_stab_B Location: 112052-112259 bp Feature: domain Description: Plasmid_stab_B Location: 112364-112571 bp Feature: domain Description: Plasmid_stab_B Location: 112364 -112571 bp Feature: gene Location: 136493-136801 bp Feature: domain Description: PRK13719 Location: 136499-136790 bp Feature: domain Description: PRK13719 Location: 1364 99-136790 bp Feature: gene Location: 136918-137169 bp Feature: gene Location: 137169-138653 bp Ori: QCU44457.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137571-138261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137571-138261 bp Feature: gene Location: 138712-139080 bp Feature: domain Description: PRK13719 Location: 138718-139033 bp Feature: domain Description: PRK13719 Location: 138718-139033 bp Feature: gene Location: 139231-139401 bp Ori: QCU44520.1 Feature: domain Description: TraY Location: 139234-139372 bp Feature: domain Description: TraY Location: 139234 -139372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784), PRK13719 (conjugal transfer transcriptional regulator TraJ; Provisional), TraY (pfam05509)

Seq: CP040540.1 Klebsiella pneumoniae strain CR-HvKP4 plasmid pCR-HvKP4-VIR, complete sequence (178154 bp)
Overview 1 RT 1: 161783-165644 bp Neighborhood of RT #1 [161783, 165644] HHA RVT-GII INT_Cre_C Feature: gene Location: 161783-162037 bp Ori: QCU44275.1 Feature: domain Description: HHA Location: 161834-162017 bp Feature: domain Description: HHA Location: 161834-162017 bp Feature: gene Location: 162304-162555 bp Feature: gene Location: 162555-164039 bp Ori: QCU44277.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162957-163647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16295 7-163647 bp Feature: gene Location: 164125-165261 bp Ori: QCU44278.1 Feature: domain Description: INT_Cre_C Location: 164548-165202 bp Feature: domain Description: INT_Cre_C Location: 1645 48-165 202 bp Feature: gene Location: 165327-165644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)