myRT

myRT report for GCA_005860785.2_ASM586078v2

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Seq: CP048835.1 Streptomyces sp. So13.3 chromosome, complete genome (9564008 bp)
Overview 1 RT 1: 129752-136572 bp 2 RT 2: 1659300-1665052 bp 3 RT 3: 1951594-1956847 bp 4 RT 4: 3459675-3467649 bp 5 RT 5: 9527256-9530812 bp Neighborhood of RT #1 [129752, 136873] RVT-GII GIIM DDE_5 DUF4096 COG3293 Neighborhood of RT #2 [1659300, 1665066] STAS_anti-anti-sigma_factors Tra8 Tra8 RVT-GII GIIM RVT_N RVT-GII Nterm_IS4 DDE_Tnp_1 HTH_Tnp_4 DDE_Tnp_1 Neighborhood of RT #3 [1951594, 1956960] Endonuclease_7 RVT-GII GIIM HTH_XRE ImmA Pat17_PNPLA8_PNPLA9_like Neighborhood of RT #4 [3459675, 3467678] Mrr_cat aspC RVT-GII GIIM DDE_5 Tra8 Tra8 Tra8 Neighborhood of RT #5 [9527256, 9531619] PHA02517 Tra8 Tra8 RVT-GII GIIM DDE_Tnp_1 DDE_Tnp_1_assoc Feature: gene Location: 129752-130210 bp Feature: gene Location: 130448-131367 bp Feature: gene Location: 132281-133645 bp Ori: QNA70660.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132620-133259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 32620-1 33259 bp Feature: domain Description: GIIM Note: maturase Location: 133340-133562 bp Feature: domain Description: GIIM Note: maturase Location: 1 33340-1 33562 bp Feature: gene Location: 134237-135682 bp Ori: QNA70661.1 Feature: domain Description: DDE_5 Location: 134306-135089 bp Feature: domain Description: DDE_5 Location: 1 34306-1 35089 bp Feature: gene Location: 135963-136873 bp Feature: domain Description: DUF4096 Location: 136095-136323 bp Feature: domain Description: DUF4096 Location: 1 36095-1 36323 bp Feature: domain Description: COG3293 Location: 136473-136572 bp Feature: domain Description: COG3293 Location: 1 36473-1 36572 bp Feature: gene Location: 1659300-1659692 bp Ori: QNA71807.1 Feature: domain Description: STAS_anti-anti-sigma_factors Location: 1659339-1659612 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 1 659339-1 65961 2 bp Feature: gene Location: 1659776-1660292 bp Feature: domain Description: Tra8 Location: 1659791-1659860 bp Feature: domain Description: Tra8 Location: 1 659791 -1 659860 bp Feature: domain Description: Tra8 Location: 1659923-1660046 bp Feature: domain Description: Tra8 Location: 1 659923-1 660046 bp Feature: gene Location: 1660365-1661408 bp Ori: QNA71808.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1660368-1660647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 660368-1 660647 bp Feature: domain Description: GIIM Note: maturase Location: 1660740-1660932 bp Feature: domain Description: GIIM Note: maturase Location: 1 660740-1 660932 bp Feature: gene Location: 1661405-1662166 bp Feature: domain Description: RVT_N Location: 1661489-1661726 bp Feature: domain Description: RVT_N Location: 1 661 489-1 661 726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1661786-1662140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 661 786-1 6621 40 bp Feature: gene Location: 1662847-1664091 bp Ori: QNA71809.1 Feature: domain Description: Nterm_IS4 Location: 1662901-1663192 bp Feature: domain Description: Nterm_IS4 Location: 1 662901 -1 6631 92 bp Feature: domain Description: DDE_Tnp_1 Location: 1663258-1663960 bp Feature: domain Description: DDE_Tnp_1 Location: 1 663258-1 663960 bp Feature: gene Location: 1664299-1665066 bp Ori: QNA71810.1 Feature: domain Description: HTH_Tnp_4 Location: 1664440-1664578 bp Feature: domain Description: HTH_Tnp_4 Location: 1 664440-1 664578 bp Feature: domain Description: DDE_Tnp_1 Location: 1664602-1665052 bp Feature: domain Description: DDE_Tnp_1 Location: 1 664602-1 665052 bp Feature: gene Location: 1951594-1951968 bp Ori: QNA72016.1 Feature: domain Description: Endonuclease_7 Location: 1951714-1951963 bp Feature: domain Description: Endonuclease_7 Location: 1 951 71 4-1 951 963 bp Feature: gene Location: 1951975-1952316 bp Feature: gene Location: 1952951-1954315 bp Ori: QNA72018.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1953290-1953929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 953290-1 953929 bp Feature: domain Description: GIIM Note: maturase Location: 1954010-1954232 bp Feature: domain Description: GIIM Note: maturase Location: 1 95401 0-1 954232 bp Feature: gene Location: 1954764-1955789 bp Ori: QNA72019.1 Feature: domain Description: HTH_XRE Location: 1954791-1954959 bp Feature: domain Description: HTH_XRE Location: 1 954791 -1 954959 bp Feature: domain Description: ImmA Location: 1955157-1955667 bp Feature: domain Description: ImmA Location: 1 9551 57-1 955667 bp Feature: gene Location: 1956010-1956960 bp Ori: QNA72020.1 Feature: domain Description: Pat17_PNPLA8_PNPLA9_like Location: 1956028-1956847 bp Feature: domain Description: Pat1 7_PNPLA8_PNPLA9_like Location: 1 956028-1 956847 bp Feature: gene Location: 3459675-3460382 bp Ori: QNA73173.1 Feature: domain Description: Mrr_cat Location: 3459939-3460269 bp Feature: domain Description: Mrr_cat Location: 3459939-3460269 bp Feature: gene Location: 3460496-3461812 bp Ori: QNA73174.1 Gene: aspS Feature: domain Description: aspC Location: 3460514-3461810 bp Feature: domain Description: aspC Location: 346051 4-3461 81 0 bp Feature: gene Location: 3462733-3464097 bp Ori: QNA73175.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3463072-3463711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3463072-346371 1 bp Feature: domain Description: GIIM Note: maturase Location: 3463792-3464014 bp Feature: domain Description: GIIM Note: maturase Location: 3463792-346401 4 bp Feature: gene Location: 3464689-3466134 bp Ori: QNA73176.1 Feature: domain Description: DDE_5 Location: 3464758-3465541 bp Feature: domain Description: DDE_5 Location: 3464758-3465541 bp Feature: gene Location: 3466479-3467678 bp Ori: QNA73177.1 Feature: domain Description: Tra8 Location: 3466518-3466776 bp Feature: domain Description: Tra8 Location: 346651 8-3466776 bp Feature: domain Description: Tra8 Location: 3466875-3467241 bp Feature: domain Description: Tra8 Location: 3466875-3467241 bp Feature: domain Description: Tra8 Location: 3467307-3467649 bp Feature: domain Description: Tra8 Location: 3467307-3467649 bp Feature: gene Location: 9527256-9527498 bp Ori: QNA77598.1 Feature: domain Description: PHA02517 Location: 9527259-9527481 bp Feature: domain Description: PHA0251 7 Location: 9527259-9527481 bp Feature: gene Location: 9527551-9528069 bp Feature: domain Description: Tra8 Location: 9527560-9527635 bp Feature: domain Description: Tra8 Location: 9527560-9527635 bp Feature: domain Description: Tra8 Location: 9527698-9528040 bp Feature: domain Description: Tra8 Location: 9527698-9528040 bp Feature: gene Location: 9528142-9529155 bp Ori: QNA78572.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9528145-9528394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95281 45-9528394 bp Feature: domain Description: GIIM Note: maturase Location: 9528451-9528679 bp Feature: domain Description: GIIM Note: maturase Location: 9528451 -9528679 bp Feature: gene Location: 9529382-9530302 bp Ori: QNA77599.1 Feature: domain Description: DDE_Tnp_1 Location: 9529457-9530150 bp Feature: domain Description: DDE_Tnp_1 Location: 9529457-95301 50 bp Feature: gene Location: 9530533-9531619 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 9530548-9530812 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 9530548-953081 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), DUF4096 (pfam13340), COG3293 (Transposase ), STAS_anti-anti-sigma_factors (cd07043), Tra8 (COG2826), RVT_N (pfam13655), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609)
HTH_Tnp_4 (pfam13613), Endonuclease_7 (pfam02945), HTH_XRE (smart00530), ImmA (COG2856), Pat17_PNPLA8_PNPLA9_like (cd07199), Mrr_cat (pfam04471), aspC (PRK05159), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1_assoc (pfam13808)