myRT

myRT report for GCA_005886035.1_ASM588603v1

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Seq: CP040390.1 Escherichia coli strain A1_136 chromosome, complete genome (5305706 bp)
Overview 1 RT 1: 86419-90161 bp 2 RT 2: 105144-108714 bp 3 RT 3: 2050467-2054249 bp 4 RT 4: 3151763-3157657 bp 5 RT 5: 4766386-4770669 bp Neighborhood of RT #1 [86419, 90564] zinc_ribbon_11 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [105144, 108716] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM DDE_Tnp_IS66_C Dps Neighborhood of RT #3 [2050467, 2054649] PRK09413 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [3151763, 3157794] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #5 [4766386, 4770677] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 86419-86829 bp Ori: QCV37355.1 Feature: domain Description: zinc_ribbon_11 Location: 86461-86779 bp Feature: domain Description: zinc_ribbon_1 1 Location: 86461 -86779 bp Feature: gene Location: 87081-87569 bp Feature: domain Description: PHA02517 Location: 87084-87534 bp Feature: domain Description: PHA0251 7 Location: 87084-87534 bp Feature: gene Location: 87650-89158 bp Ori: QCV42007.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87908-88640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87908-88640 bp Feature: domain Description: GIIM Note: maturase Location: 88715-88913 bp Feature: domain Description: GIIM Note: maturase Location: 8871 5-8891 3 bp Feature: gene Location: 89467-89838 bp Feature: gene Location: 89831-90564 bp Feature: domain Description: InsE Location: 89870-90161 bp Feature: domain Description: InsE Location: 89870-901 61 bp Feature: gene Location: 105144-106235 bp Feature: domain Description: COG4584 Location: 105162-105573 bp Feature: domain Description: COG4584 Location: 1 051 62-1 05573 bp Feature: domain Description: COG4584 Location: 105687-106101 bp Feature: domain Description: COG4584 Location: 1 05687-1 061 01 bp Feature: gene Location: 106252-107007 bp Ori: QCV37371.1 Feature: domain Description: IstB_IS21_ATP Location: 106324-106408 bp Feature: domain Description: IstB_IS21 _ATP Location: 1 06324-1 06408 bp Feature: domain Description: IstB_IS21 Location: 106417-106942 bp Feature: domain Description: IstB_IS21 Location: 1 0641 7-1 06942 bp Feature: gene Location: 107149-108198 bp Ori: QCV37372.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107167-107821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 071 67-1 07821 bp Feature: domain Description: GIIM Note: maturase Location: 107899-108124 bp Feature: domain Description: GIIM Note: maturase Location: 1 07899-1 081 24 bp Feature: gene Location: 108281-108460 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 108326-108437 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 08326-1 08437 bp Feature: gene Location: 108504-108716 bp Feature: domain Description: Dps Location: 108522-108714 bp Feature: domain Description: Dps Location: 1 08522-1 0871 4 bp Feature: gene Location: 2050467-2051122 bp Feature: domain Description: PRK09413 Location: 2050515-2050875 bp Feature: domain Description: PRK0941 3 Location: 205051 5-2050875 bp Feature: gene Location: 2051166-2051639 bp Feature: domain Description: PHA02517 Location: 2051172-2051637 bp Feature: domain Description: PHA0251 7 Location: 2051 1 72-2051 637 bp Feature: gene Location: 2051729-2053237 bp Ori: QCV42081.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051987-2052719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051 987-205271 9 bp Feature: domain Description: GIIM Note: maturase Location: 2052794-2052992 bp Feature: domain Description: GIIM Note: maturase Location: 2052794-2052992 bp Feature: gene Location: 2053546-2053917 bp Feature: gene Location: 2053910-2054649 bp Feature: domain Description: InsE Location: 2053913-2054249 bp Feature: domain Description: InsE Location: 205391 3-2054249 bp Feature: gene Location: 3151763-3152233 bp Feature: gene Location: 3152279-3152419 bp Ori: QCV40135.1 Feature: domain Description: Phage_ASH Location: 3152306-3152399 bp Feature: domain Description: Phage_ASH Location: 31 52306-31 52399 bp Feature: gene Location: 3152580-3155789 bp Ori: QCV40136.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3153108-3153597 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31 531 08-31 53597 bp Feature: domain Description: nitrilase Location: 3155103-3155700 bp Feature: domain Description: nitrilase Location: 31 551 03-31 55700 bp Feature: gene Location: 3156084-3156887 bp Ori: QCV40137.1 Feature: domain Description: AbiEi_3_N Location: 3156117-3156378 bp Feature: domain Description: AbiEi_3_N Location: 31 561 1 7-31 56378 bp Feature: domain Description: AbiEi_3 Location: 3156390-3156846 bp Feature: domain Description: AbiEi_3 Location: 31 56390-31 56846 bp Feature: gene Location: 3156874-3157794 bp Ori: QCV40138.1 Feature: domain Description: AbiEii Location: 3156916-3157657 bp Feature: domain Description: AbiEii Location: 31 5691 6-31 57657 bp Feature: gene Location: 4766386-4767291 bp Feature: gene Location: 4767265-4767552 bp Feature: gene Location: 4767777-4768168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4768107-4768167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47681 07-47681 67 bp Feature: gene Location: 4768344-4768865 bp Ori: QCV41564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4768350-4768632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4768350-4768632 bp Feature: domain Description: GIIM Note: maturase Location: 4768680-4768860 bp Feature: domain Description: GIIM Note: maturase Location: 4768680-4768860 bp Feature: gene Location: 4769187-4769375 bp Feature: gene Location: 4769448-4770677 bp Ori: QCV41566.1 Feature: domain Description: YesM Location: 4769928-4770669 bp Feature: domain Description: YesM Location: 4769928-4770669 bp Sorry, your 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Associated domains:myRT zinc_ribbon_11 (pfam11682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), DDE_Tnp_IS66_C (pfam13817), Dps (COG0783)
PRK09413 (IS2 repressor TnpA; Reviewed), Phage_ASH (pfam10554), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), YesM (COG2972)