myRT

myRT report for GCA_005886545.1_ASM588654v1

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Seq: CP035649.1 Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence (257028 bp)
Overview 1 RT 1: 26205-32058 bp Neighborhood of RT #1 [26205, 32177] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 26205-27899 bp Ori: QCV53947.1 Feature: domain Description: VirB4 Location: 26523-27207 bp Feature: domain Description: VirB4 Location: 26523-27207 bp Feature: gene Location: 28167-28400 bp Feature: gene Location: 28587-30464 bp Ori: QCV53949.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28902-29640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28902-29640 bp Feature: domain Description: HNHc Note: nucleases Location: 30198-30351 bp Feature: domain Description: HNHc Note: nucleases Location: 301 98-30351 bp Feature: gene Location: 30595-30972 bp Feature: gene Location: 30972-32177 bp Ori: QCV53950.1 Feature: domain Description: Glucosaminidase Location: 31248-31644 bp Feature: domain Description: Glucosaminidase Location: 31 248-31 644 bp Feature: domain Description: Peptidase_M23 Location: 31821-32058 bp Feature: domain Description: Peptidase_M23 Location: 31 821 -32058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: CP035648.1 Enterococcus faecium strain UAMSEF_01 chromosome, complete genome (2824869 bp)
Overview 1 RT 1: 281385-286391 bp 2 RT 2: 2686842-2691646 bp 3 RT 3: 2735343-2740101 bp Neighborhood of RT #1 [281385, 286405] HTH_XRE Rol_Rep_N Rep_trans RVT-GII ArdA Neighborhood of RT #2 [2686842, 2691660] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Neighborhood of RT #3 [2735343, 2740106] ZnuB ZnuC RVT-GII GIIM RAYT LPXTG_anchor Feature: gene Location: 281385-281538 bp Feature: gene Location: 281561-282766 bp Ori: QCV51566.1 Feature: domain Description: HTH_XRE Location: 281606-281750 bp Feature: domain Description: HTH_XRE Location: 2 81606-2 81750 bp Feature: domain Description: Rol_Rep_N Location: 281777-282044 bp Feature: domain Description: Rol_Rep_N Location: 2 81777-2 82 044 bp Feature: domain Description: Rep_trans Location: 282068-282677 bp Feature: domain Description: Rep_trans Location: 2 82 068-2 82 677 bp Feature: gene Location: 283575-285463 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283884-284370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 83884-2 84370 bp Feature: gene Location: 285567-285791 bp Feature: gene Location: 285908-286405 bp Ori: QCV51568.1 Feature: domain Description: ArdA Location: 285926-286391 bp Feature: domain Description: ArdA Location: 2 8592 6-2 86391 bp Feature: gene Location: 2686842-2688026 bp Ori: QCV53725.1 Feature: domain Description: HTH_XRE Location: 2686872-2687016 bp Feature: domain Description: HTH_XRE Location: 2 686872 -2 687016 bp Feature: domain Description: Rol_Rep_N Location: 2687049-2687313 bp Feature: domain Description: Rol_Rep_N Location: 2 687049-2 687313 bp Feature: domain Description: Rep_trans Location: 2687337-2687949 bp Feature: domain Description: Rep_trans Location: 2 687337-2 687949 bp Feature: gene Location: 2688023-2688160 bp Ori: QCV53726.1 Feature: domain Description: DUF3789 Location: 2688050-2688143 bp Feature: domain Description: DUF3789 Location: 2 688050-2 688143 bp Feature: gene Location: 2688906-2690816 bp Ori: QCV53727.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2689239-2689977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6892 39-2 689977 bp Feature: domain Description: HNHc Note: nucleases Location: 2690532-2690697 bp Feature: domain Description: HNHc Note: nucleases Location: 2 690532 -2 690697 bp Feature: gene Location: 2690920-2691144 bp Feature: gene Location: 2691157-2691660 bp Ori: QCV53728.1 Feature: domain Description: ArdA Location: 2691175-2691646 bp Feature: domain Description: ArdA Location: 2 691175-2 691646 bp Feature: gene Location: 2735343-2736185 bp Ori: QCV53767.1 Feature: domain Description: ZnuB Location: 2735355-2736159 bp Feature: domain Description: ZnuB Location: 2 735355-2 736159 bp Feature: gene Location: 2736187-2736906 bp Ori: QCV53768.1 Feature: domain Description: ZnuC Location: 2736190-2736883 bp Feature: domain Description: ZnuC Location: 2 736190-2 736883 bp Feature: gene Location: 2737155-2738543 bp Ori: QCV53769.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2737476-2738091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 737476-2 738091 bp Feature: domain Description: GIIM Note: maturase Location: 2738148-2738364 bp Feature: domain Description: GIIM Note: maturase Location: 2 738148-2 738364 bp Feature: gene Location: 2739110-2739583 bp Ori: QCV53770.1 Gene: tnpA Feature: domain Description: RAYT Location: 2739128-2739512 bp Feature: domain Description: RAYT Location: 2 73912 8-2 739512 bp Feature: gene Location: 2740002-2740106 bp Ori: QCV53918.1 Feature: domain Description: LPXTG_anchor Location: 2740008-2740101 bp Feature: domain Description: LPXTG_anchor Location: 2 740008-2 740101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, ArdA (pfam07275), DUF3789 (pfam12664), HNHc (smart00507), ZnuB (COG1108), ZnuC (COG1121), GIIM (pfam08388)
RAYT (COG1943), LPXTG_anchor (TIGR01167)

Seq: CP035644.1 Enterococcus faecium strain UAMSEF_01 plasmid unnamed2, complete sequence (37314 bp)
Overview 1 RT 1: 21079-27949 bp Neighborhood of RT #1 [21079, 27948] PinE Tra8 RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 21079-21642 bp Ori: QCV51273.1 Feature: domain Description: PinE Location: 21091-21637 bp Feature: domain Description: PinE Location: 21091-2163 7 bp Feature: gene Location: 22285-23238 bp Ori: QCV51274.1 Feature: domain Description: Tra8 Location: 22288-23215 bp Feature: domain Description: Tra8 Location: 22288-23 215 bp Feature: gene Location: 23216-24691 bp Ori: QCV51275.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23564-24029 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23 564-24029 bp Feature: gene Location: 25063-26250 bp Ori: QCV51276.1 Feature: domain Description: Transposase_mut Location: 25066-26209 bp Feature: domain Description: Transposase_mut Location: 25066-26209 bp Feature: gene Location: 26503-27948 bp Feature: domain Description: HsdM Location: 26524-27949 bp Feature: domain Description: HsdM Location: 26524-27949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)