myRT

myRT report for GCA_005886655.1_ASM588665v1

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Seq: CP035654.1 Enterococcus faecium strain UAMSEF_08 chromosome, complete genome (2827987 bp)
Overview 1 RT 1: 2689962-2694766 bp 2 RT 2: 2738463-2743221 bp Neighborhood of RT #1 [2689962, 2694780] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Neighborhood of RT #2 [2738463, 2743226] ZnuB ZnuC RVT-GII GIIM RAYT LPXTG_anchor Feature: gene Location: 2689962-2691146 bp Ori: QCV50798.1 Feature: domain Description: HTH_XRE Location: 2689992-2690136 bp Feature: domain Description: HTH_XRE Location: 2689992-26901 36 bp Feature: domain Description: Rol_Rep_N Location: 2690169-2690433 bp Feature: domain Description: Rol_Rep_N Location: 26901 69-2690433 bp Feature: domain Description: Rep_trans Location: 2690457-2691069 bp Feature: domain Description: Rep_trans Location: 2690457-2691 069 bp Feature: gene Location: 2691143-2691280 bp Ori: QCV50799.1 Feature: domain Description: DUF3789 Location: 2691170-2691263 bp Feature: domain Description: DUF3789 Location: 2691 1 70-2691 263 bp Feature: gene Location: 2692026-2693936 bp Ori: QCV50800.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2692359-2693097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2692359-2693097 bp Feature: domain Description: HNHc Note: nucleases Location: 2693652-2693817 bp Feature: domain Description: HNHc Note: nucleases Location: 2693652-269381 7 bp Feature: gene Location: 2694040-2694264 bp Feature: gene Location: 2694277-2694780 bp Ori: QCV50802.1 Feature: domain Description: ArdA Location: 2694295-2694766 bp Feature: domain Description: ArdA Location: 2694295-2694766 bp Feature: gene Location: 2738463-2739305 bp Ori: QCV50841.1 Feature: domain Description: ZnuB Location: 2738475-2739279 bp Feature: domain Description: ZnuB Location: 2738475-2739279 bp Feature: gene Location: 2739307-2740026 bp Ori: QCV50842.1 Feature: domain Description: ZnuC Location: 2739310-2740003 bp Feature: domain Description: ZnuC Location: 273931 0-2740003 bp Feature: gene Location: 2740275-2741663 bp Ori: QCV50843.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2740596-2741211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2740596-2741 21 1 bp Feature: domain Description: GIIM Note: maturase Location: 2741268-2741484 bp Feature: domain Description: GIIM Note: maturase Location: 2741 268-2741 484 bp Feature: gene Location: 2742230-2742703 bp Ori: QCV50844.1 Gene: tnpA Feature: domain Description: RAYT Location: 2742248-2742632 bp Feature: domain Description: RAYT Location: 2742248-2742632 bp Feature: gene Location: 2743122-2743226 bp Ori: QCV51010.1 Feature: domain Description: LPXTG_anchor Location: 2743128-2743221 bp Feature: domain Description: LPXTG_anchor Location: 27431 28-2743221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), ArdA (pfam07275), ZnuB (COG1108), ZnuC (COG1121), GIIM (pfam08388)
RAYT (COG1943), LPXTG_anchor (TIGR01167)

Seq: CP035655.1 Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence (256961 bp)
Overview 1 RT 1: 26204-32057 bp Neighborhood of RT #1 [26204, 32176] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 26204-27898 bp Ori: QCV51041.1 Feature: domain Description: VirB4 Location: 26522-27206 bp Feature: domain Description: VirB4 Location: 2 652 2 -2 72 06 bp Feature: gene Location: 28166-28399 bp Feature: gene Location: 28586-30463 bp Ori: QCV51043.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28901-29639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8901-2 9639 bp Feature: domain Description: HNHc Note: nucleases Location: 30197-30350 bp Feature: domain Description: HNHc Note: nucleases Location: 30197-30350 bp Feature: gene Location: 30594-30971 bp Feature: gene Location: 30971-32176 bp Ori: QCV51044.1 Feature: domain Description: Glucosaminidase Location: 31247-31643 bp Feature: domain Description: Glucosaminidase Location: 312 47-31643 bp Feature: domain Description: Peptidase_M23 Location: 31820-32057 bp Feature: domain Description: Peptidase_M2 3 Location: 3182 0-32 057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: CP035650.1 Enterococcus faecium strain UAMSEF_08 plasmid unnamed2, complete sequence (37293 bp)
Overview 1 RT 1: 21056-27928 bp Neighborhood of RT #1 [21056, 27927] PinE Tra8 RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 21056-21619 bp Ori: QCV48376.1 Feature: domain Description: PinE Location: 21068-21614 bp Feature: domain Description: PinE Location: 21068-21614 bp Feature: gene Location: 22262-23215 bp Ori: QCV48377.1 Feature: domain Description: Tra8 Location: 22265-23192 bp Feature: domain Description: Tra8 Location: 22265-23 192 bp Feature: gene Location: 23193-24668 bp Ori: QCV48378.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23541-24006 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23 541-24006 bp Feature: gene Location: 25040-26229 bp Feature: domain Description: Transposase_mut Location: 25043-25595 bp Feature: domain Description: Transposase_mut Location: 25043 -25595 bp Feature: gene Location: 26482-27927 bp Feature: domain Description: HsdM Location: 26503-27928 bp Feature: domain Description: HsdM Location: 26503 -27928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)