myRT

myRT report for GCA_005886715.1_ASM588671v1

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Seq: CP035660.1 Enterococcus faecium strain UAMSEF_09 chromosome, complete genome (2912202 bp)
Overview 1 RT 1: 281383-286387 bp 2 RT 2: 2773844-2778649 bp 3 RT 3: 2822394-2827152 bp Neighborhood of RT #1 [281383, 286401] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Neighborhood of RT #2 [2773844, 2778663] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII ArdA Neighborhood of RT #3 [2822394, 2827157] ZnuB ZnuC RVT-GII GIIM RAYT LPXTG_anchor Feature: gene Location: 281383-281536 bp Feature: gene Location: 281559-282764 bp Ori: QCV45669.1 Feature: domain Description: HTH_XRE Location: 281604-281748 bp Feature: domain Description: HTH_XRE Location: 281 604-281 748 bp Feature: domain Description: Rol_Rep_N Location: 281775-282042 bp Feature: domain Description: Rol_Rep_N Location: 281 775-282042 bp Feature: domain Description: Rep_trans Location: 282066-282675 bp Feature: domain Description: Rep_trans Location: 282066-282675 bp Feature: gene Location: 283573-285459 bp Ori: QCV45670.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283882-284620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283882-284620 bp Feature: domain Description: HNHc Note: nucleases Location: 285175-285340 bp Feature: domain Description: HNHc Note: nucleases Location: 2851 75-285340 bp Feature: gene Location: 285563-285787 bp Feature: gene Location: 285904-286401 bp Ori: QCV45672.1 Feature: domain Description: ArdA Location: 285922-286387 bp Feature: domain Description: ArdA Location: 285922-286387 bp Feature: gene Location: 2773844-2775028 bp Ori: QCV47893.1 Feature: domain Description: HTH_XRE Location: 2773874-2774018 bp Feature: domain Description: HTH_XRE Location: 2773874-277401 8 bp Feature: domain Description: Rol_Rep_N Location: 2774051-2774315 bp Feature: domain Description: Rol_Rep_N Location: 2774051 -277431 5 bp Feature: domain Description: Rep_trans Location: 2774339-2774951 bp Feature: domain Description: Rep_trans Location: 2774339-2774951 bp Feature: gene Location: 2775025-2775162 bp Ori: QCV47894.1 Feature: domain Description: DUF3789 Location: 2775052-2775145 bp Feature: domain Description: DUF3789 Location: 2775052-27751 45 bp Feature: gene Location: 2775908-2777819 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776241-2776874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776241 -2776874 bp Feature: gene Location: 2777923-2778147 bp Feature: gene Location: 2778160-2778663 bp Ori: QCV47895.1 Feature: domain Description: ArdA Location: 2778178-2778649 bp Feature: domain Description: ArdA Location: 27781 78-2778649 bp Feature: gene Location: 2822394-2823236 bp Ori: QCV47934.1 Feature: domain Description: ZnuB Location: 2822406-2823210 bp Feature: domain Description: ZnuB Location: 2822406-282321 0 bp Feature: gene Location: 2823238-2823957 bp Ori: QCV47935.1 Feature: domain Description: ZnuC Location: 2823241-2823934 bp Feature: domain Description: ZnuC Location: 2823241 -2823934 bp Feature: gene Location: 2824206-2825594 bp Ori: QCV47936.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2824527-2825142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2824527-28251 42 bp Feature: domain Description: GIIM Note: maturase Location: 2825199-2825415 bp Feature: domain Description: GIIM Note: maturase Location: 28251 99-282541 5 bp Feature: gene Location: 2826161-2826634 bp Ori: QCV47937.1 Gene: tnpA Feature: domain Description: RAYT Location: 2826179-2826563 bp Feature: domain Description: RAYT Location: 28261 79-2826563 bp Feature: gene Location: 2827053-2827157 bp Ori: QCV48089.1 Feature: domain Description: LPXTG_anchor Location: 2827059-2827152 bp Feature: domain Description: LPXTG_anchor Location: 2827059-28271 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), DUF3789 (pfam12664), ZnuB (COG1108), ZnuC (COG1121), GIIM (pfam08388)
RAYT (COG1943), LPXTG_anchor (TIGR01167)

Seq: CP035661.1 Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence (295052 bp)
Overview 1 RT 1: 26204-32057 bp 2 RT 2: 227933-234801 bp Neighborhood of RT #1 [26204, 32176] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Neighborhood of RT #2 [227933, 234806] HsdM Transposase_mut RVT-AbiP2 PinE Feature: gene Location: 26204-27898 bp Ori: QCV48119.1 Feature: domain Description: VirB4 Location: 26522-27206 bp Feature: domain Description: VirB4 Location: 2 652 2 -2 72 06 bp Feature: gene Location: 28166-28399 bp Feature: gene Location: 28586-30463 bp Ori: QCV48121.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28901-29639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8901-2 9639 bp Feature: domain Description: HNHc Note: nucleases Location: 30197-30350 bp Feature: domain Description: HNHc Note: nucleases Location: 30197-30350 bp Feature: gene Location: 30594-30971 bp Feature: gene Location: 30971-32176 bp Ori: QCV48122.1 Feature: domain Description: Glucosaminidase Location: 31247-31643 bp Feature: domain Description: Glucosaminidase Location: 312 47-31643 bp Feature: domain Description: Peptidase_M23 Location: 31820-32057 bp Feature: domain Description: Peptidase_M2 3 Location: 3182 0-32 057 bp Feature: gene Location: 227933-229378 bp Feature: domain Description: HsdM Location: 227954-229379 bp Feature: domain Description: HsdM Location: 2 2 7954-2 2 9379 bp Feature: gene Location: 229631-230821 bp Feature: domain Description: Transposase_mut Location: 229634-230186 bp Feature: domain Description: Transposase_mut Location: 2 2 9634-2 30186 bp Feature: gene Location: 231193-232668 bp Ori: QCV48295.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 231541-232006 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 31541-2 32 006 bp Feature: gene Location: 232646-233600 bp Feature: gene Location: 234243-234806 bp Ori: QCV48296.1 Feature: domain Description: PinE Location: 234255-234801 bp Feature: domain Description: PinE Location: 2 342 55-2 34801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), HsdM (COG0286), Transposase_mut (pfam00872), RVT-AbiP2, PinE (COG1961)