myRT

myRT report for GCA_005886735.1_ASM588673v1

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Seq: CP035666.1 Enterococcus faecium strain UAMSEF_20 chromosome, complete genome (2912170 bp)
Overview 1 RT 1: 281386-286389 bp 2 RT 2: 2773811-2778616 bp 3 RT 3: 2822361-2827119 bp Neighborhood of RT #1 [281386, 286403] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Neighborhood of RT #2 [2773811, 2778630] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII ArdA Neighborhood of RT #3 [2822361, 2827124] ZnuB ZnuC RVT-GII GIIM RAYT LPXTG_anchor Feature: gene Location: 281386-281539 bp Feature: gene Location: 281562-282767 bp Ori: QCV42600.1 Feature: domain Description: HTH_XRE Location: 281607-281751 bp Feature: domain Description: HTH_XRE Location: 281 607-281 751 bp Feature: domain Description: Rol_Rep_N Location: 281778-282045 bp Feature: domain Description: Rol_Rep_N Location: 281 778-282045 bp Feature: domain Description: Rep_trans Location: 282069-282678 bp Feature: domain Description: Rep_trans Location: 282069-282678 bp Feature: gene Location: 283551-285461 bp Ori: QCV42601.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283884-284622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283884-284622 bp Feature: domain Description: HNHc Note: nucleases Location: 285177-285342 bp Feature: domain Description: HNHc Note: nucleases Location: 2851 77-285342 bp Feature: gene Location: 285565-285789 bp Feature: gene Location: 285906-286403 bp Ori: QCV42603.1 Feature: domain Description: ArdA Location: 285924-286389 bp Feature: domain Description: ArdA Location: 285924-286389 bp Feature: gene Location: 2773811-2774995 bp Ori: QCV44791.1 Feature: domain Description: HTH_XRE Location: 2773841-2773985 bp Feature: domain Description: HTH_XRE Location: 2773841 -2773985 bp Feature: domain Description: Rol_Rep_N Location: 2774018-2774282 bp Feature: domain Description: Rol_Rep_N Location: 277401 8-2774282 bp Feature: domain Description: Rep_trans Location: 2774306-2774918 bp Feature: domain Description: Rep_trans Location: 2774306-277491 8 bp Feature: gene Location: 2774992-2775129 bp Ori: QCV44792.1 Feature: domain Description: DUF3789 Location: 2775019-2775112 bp Feature: domain Description: DUF3789 Location: 277501 9-27751 1 2 bp Feature: gene Location: 2775875-2777786 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776208-2776946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776208-2776946 bp Feature: gene Location: 2777890-2778114 bp Feature: gene Location: 2778127-2778630 bp Ori: QCV44794.1 Feature: domain Description: ArdA Location: 2778145-2778616 bp Feature: domain Description: ArdA Location: 27781 45-277861 6 bp Feature: gene Location: 2822361-2823203 bp Ori: QCV44833.1 Feature: domain Description: ZnuB Location: 2822373-2823177 bp Feature: domain Description: ZnuB Location: 2822373-28231 77 bp Feature: gene Location: 2823205-2823924 bp Ori: QCV44834.1 Feature: domain Description: ZnuC Location: 2823208-2823901 bp Feature: domain Description: ZnuC Location: 2823208-2823901 bp Feature: gene Location: 2824173-2825561 bp Ori: QCV44835.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2824494-2825109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2824494-28251 09 bp Feature: domain Description: GIIM Note: maturase Location: 2825166-2825382 bp Feature: domain Description: GIIM Note: maturase Location: 28251 66-2825382 bp Feature: gene Location: 2826128-2826601 bp Ori: QCV44836.1 Gene: tnpA Feature: domain Description: RAYT Location: 2826146-2826530 bp Feature: domain Description: RAYT Location: 28261 46-2826530 bp Feature: gene Location: 2827020-2827124 bp Ori: QCV45017.1 Feature: domain Description: LPXTG_anchor Location: 2827026-2827119 bp Feature: domain Description: LPXTG_anchor Location: 2827026-28271 1 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), DUF3789 (pfam12664), ZnuB (COG1108), ZnuC (COG1121), GIIM (pfam08388)
RAYT (COG1943), LPXTG_anchor (TIGR01167)

Seq: CP035667.1 Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence (294919 bp)
Overview 1 RT 1: 26204-32057 bp 2 RT 2: 227802-234669 bp Neighborhood of RT #1 [26204, 32176] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Neighborhood of RT #2 [227802, 234674] HsdM Transposase_mut RVT-AbiP2 PinE Feature: gene Location: 26204-27898 bp Ori: QCV45048.1 Feature: domain Description: VirB4 Location: 26522-27206 bp Feature: domain Description: VirB4 Location: 2 652 2 -2 72 06 bp Feature: gene Location: 28166-28399 bp Feature: gene Location: 28586-30463 bp Ori: QCV45050.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28901-29639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8901-2 9639 bp Feature: domain Description: HNHc Note: nucleases Location: 30197-30350 bp Feature: domain Description: HNHc Note: nucleases Location: 30197-30350 bp Feature: gene Location: 30594-30971 bp Feature: gene Location: 30971-32176 bp Ori: QCV45051.1 Feature: domain Description: Glucosaminidase Location: 31247-31643 bp Feature: domain Description: Glucosaminidase Location: 312 47-31643 bp Feature: domain Description: Peptidase_M23 Location: 31820-32057 bp Feature: domain Description: Peptidase_M2 3 Location: 3182 0-32 057 bp Feature: gene Location: 227802-229247 bp Feature: domain Description: HsdM Location: 227823-229248 bp Feature: domain Description: HsdM Location: 2 2 782 3-2 2 92 48 bp Feature: gene Location: 229500-230689 bp Feature: domain Description: Transposase_mut Location: 229503-230418 bp Feature: domain Description: Transposase_mut Location: 2 2 9503-2 30418 bp Feature: gene Location: 231061-232536 bp Ori: QCV45219.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 231409-231874 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 31409-2 31874 bp Feature: gene Location: 232514-233468 bp Feature: gene Location: 234111-234674 bp Ori: QCV45220.1 Feature: domain Description: PinE Location: 234123-234669 bp Feature: domain Description: PinE Location: 2 3412 3-2 34669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), HsdM (COG0286), Transposase_mut (pfam00872), RVT-AbiP2, PinE (COG1961)