myRT

myRT report for GCA_005931095.1_ASM593109v1

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Seq: CP035467.1 Methylomicrobium buryatense strain 5GB1C chromosome, complete genome (4998879 bp)
Overview 1 RT 1: 216586-222759 bp 2 RT 2: 265995-278124 bp 3 RT 3: 758847-763831 bp 4 RT 4: 864712-871318 bp 5 RT 5: 1135605-1140420 bp 6 RT 6: 1795623-1800831 bp 7 RT 7: 1962016-1967570 bp 8 RT 8: 2053363-2060655 bp 9 RT 9: 2659615-2664351 bp 10 RT 10: 2674161-2680862 bp 11 RT 11: 2871116-2877630 bp 12 RT 12: 4146153-4156508 bp Neighborhood of RT #1 [216586, 222896] Acetyltransf_1 Acetyltransf_18 DDE_Tnp_Tn3 group_II_RT_mat RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [265995, 278231] DDE_Tnp_IS66 RVT-UG5 HELICc DUF1998 Neighborhood of RT #3 [758847, 763857] PTPS Methyltransf_23 RVT-GII GIIM 45_DOPA_Dioxygenase Neighborhood of RT #4 [864712, 871362] PRK09183 PDDEXK_2 Yae1_N RVT-GII GIIM PRK01254 Neighborhood of RT #5 [1135605, 1140431] DUF29 RVT-GII DUF29 cobT_DBIPRT Neighborhood of RT #6 [1795623, 1800857] arc_metj DDE_Tnp_1 DDE_Tnp_1 RVT-GII DDE_Tnp_1 PRX_BCP Neighborhood of RT #7 [1962016, 1967570] YcfA T_den_put_tspse T_den_put_tspse RVT-GII GIIM DUF820 Neighborhood of RT #8 [2053363, 2060687] NhaP YflT YflT RVT-GII GIIM NhaD Neighborhood of RT #9 [2659615, 2664351] RpoE group_II_RT_mat RVT-GII GIIM MbtH Neighborhood of RT #10 [2674161, 2680867] PRK12467 PRK12467 Thioester-redct PRK12467 RVT-GII GIIM PRK12316 Neighborhood of RT #11 [2871116, 2877638] BcsQ DDE_Tnp_1 RVT-GII GIIM T_den_put_tspse T_den_put_tspse YcfA Neighborhood of RT #12 [4146153, 4156516] PRK10791 lipid_A_lpxH RVT-GII GIIM DDE_Tnp_1 RVT-GII NhaP CAP_ED PQQ_MDH Feature: gene Location: 216586-217437 bp Ori: QCW84654.1 Feature: domain Description: Acetyltransf_1 Location: 216685-216943 bp Feature: domain Description: Acetyltransf_1 Location: 21 6685-21 6943 bp Feature: domain Description: Acetyltransf_18 Location: 217048-217414 bp Feature: domain Description: Acetyltransf_1 8 Location: 21 7048-21 741 4 bp Feature: gene Location: 217428-217802 bp Ori: QCW80999.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 217533-217776 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 21 7533-21 7776 bp Feature: gene Location: 218807-220057 bp Gene: ltrA Feature: domain Description: group_II_RT_mat Note: maturase Location: 218846-219002 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 21 8846-21 9002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219155-219668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 91 55-21 9668 bp Feature: domain Description: GIIM Note: maturase Location: 219749-219965 bp Feature: domain Description: GIIM Note: maturase Location: 21 9749-21 9965 bp Feature: gene Location: 221009-221248 bp Feature: gene Location: 221346-222896 bp Ori: QCW84655.1 Feature: domain Description: DDE_Tnp_IS66 Location: 221967-222759 bp Feature: domain Description: DDE_Tnp_IS66 Location: 221 967-222759 bp Feature: gene Location: 265995-267545 bp Ori: QCW84661.1 Feature: domain Description: DDE_Tnp_IS66 Location: 266616-267408 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26661 6-267408 bp Feature: gene Location: 267798-269081 bp Feature: gene Location: 269097-272279 bp Ori: QCW81040.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 269649-270153 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 269649-2701 53 bp Feature: gene Location: 272341-276384 bp Ori: QCW81041.1 Feature: domain Description: HELICc Location: 275629-275806 bp Feature: domain Description: HELICc Location: 275629-275806 bp Feature: gene Location: 276381-278231 bp Ori: QCW81042.1 Feature: domain Description: DUF1998 Location: 277824-278124 bp Feature: domain Description: DUF1 998 Location: 277824-2781 24 bp Feature: gene Location: 758847-759215 bp Ori: QCW81423.1 Feature: domain Description: PTPS Location: 758871-759210 bp Feature: domain Description: PTPS Location: 758871 -75921 0 bp Feature: gene Location: 759219-760118 bp Ori: QCW81424.1 Feature: domain Description: Methyltransf_23 Location: 759285-759705 bp Feature: domain Description: Methyltransf_23 Location: 759285-759705 bp Feature: gene Location: 760445-761623 bp Ori: QCW81425.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 760676-761297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 760676-761 297 bp Feature: domain Description: GIIM Note: maturase Location: 761339-761567 bp Feature: domain Description: GIIM Note: maturase Location: 761 339-761 567 bp Feature: gene Location: 762498-762836 bp Feature: gene Location: 763060-763857 bp Ori: QCW81427.1 Feature: domain Description: 45_DOPA_Dioxygenase Location: 763081-763831 bp Feature: domain Description: 45_DOPA_Dioxygenase Location: 763081 -763831 bp Feature: gene Location: 864712-865458 bp Ori: QCW81528.1 Feature: domain Description: PRK09183 Location: 864736-865444 bp Feature: domain Description: PRK091 83 Location: 864736-865444 bp Feature: gene Location: 865609-866538 bp Ori: QCW81529.1 Feature: domain Description: PDDEXK_2 Location: 865636-866320 bp Feature: domain Description: PDDEXK_2 Location: 865636-866320 bp Feature: domain Description: Yae1_N Location: 866326-866419 bp Feature: domain Description: Yae1 _N Location: 866326-86641 9 bp Feature: gene Location: 867296-868546 bp Ori: QCW81530.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867500-868157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867500-8681 57 bp Feature: domain Description: GIIM Note: maturase Location: 868238-868454 bp Feature: domain Description: GIIM Note: maturase Location: 868238-868454 bp Feature: gene Location: 868800-869090 bp Feature: gene Location: 869242-871362 bp Ori: QCW84701.1 Feature: domain Description: PRK01254 Location: 869257-871318 bp Feature: domain Description: PRK01 254 Location: 869257-871 31 8 bp Feature: gene Location: 1135605-1136009 bp Feature: gene Location: 1136685-1137032 bp Ori: QCW81739.1 Feature: domain Description: DUF29 Location: 1136718-1137024 bp Feature: domain Description: DUF29 Location: 1 1 3671 8-1 1 37024 bp Feature: gene Location: 1137576-1138825 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1137780-1138134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 37780-1 1 381 34 bp Feature: gene Location: 1139196-1139309 bp Feature: domain Description: DUF29 Location: 1139208-1139310 bp Feature: domain Description: DUF29 Location: 1 1 39208-1 1 3931 0 bp Feature: gene Location: 1139394-1140431 bp Ori: QCW81740.1 Gene: cobT Feature: domain Description: cobT_DBIPRT Location: 1139430-1140420 bp Feature: domain Description: cobT_DBIPRT Location: 1 1 39430-1 1 40420 bp Feature: gene Location: 1795623-1795832 bp Ori: QCW82214.1 Feature: domain Description: arc_metj Location: 1795626-1795743 bp Feature: domain Description: arc_metj Location: 1 795626-1 795743 bp Feature: gene Location: 1795847-1796305 bp Feature: domain Description: DDE_Tnp_1 Location: 1795913-1796138 bp Feature: domain Description: DDE_Tnp_1 Location: 1 79591 3-1 7961 38 bp Feature: domain Description: DDE_Tnp_1 Location: 1796165-1796291 bp Feature: domain Description: DDE_Tnp_1 Location: 1 7961 65-1 796291 bp Feature: gene Location: 1796955-1798230 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1797213-1797441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 79721 3-1 797441 bp Feature: gene Location: 1798788-1799963 bp Ori: QCW82215.1 Feature: domain Description: DDE_Tnp_1 Location: 1799238-1799685 bp Feature: domain Description: DDE_Tnp_1 Location: 1 799238-1 799685 bp Feature: gene Location: 1800276-1800857 bp Ori: QCW82216.1 Feature: domain Description: PRX_BCP Location: 1800381-1800831 bp Feature: domain Description: PRX_BCP Location: 1 800381 -1 800831 bp Feature: gene Location: 1962016-1962198 bp Ori: QCW82338.1 Feature: domain Description: YcfA Location: 1962019-1962190 bp Feature: domain Description: YcfA Location: 1 96201 9-1 9621 90 bp Feature: gene Location: 1962418-1963410 bp Ori: QCW82339.1 Feature: domain Description: T_den_put_tspse Location: 1962598-1962724 bp Feature: domain Description: T_den_put_tspse Location: 1 962598-1 962724 bp Feature: domain Description: T_den_put_tspse Location: 1963069-1963267 bp Feature: domain Description: T_den_put_tspse Location: 1 963069-1 963267 bp Feature: gene Location: 1963789-1964967 bp Ori: QCW82340.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1964020-1964641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 964020-1 964641 bp Feature: domain Description: GIIM Note: maturase Location: 1964683-1964911 bp Feature: domain Description: GIIM Note: maturase Location: 1 964683-1 96491 1 bp Feature: gene Location: 1966029-1966589 bp Ori: QCW82341.1 Feature: domain Description: DUF820 Location: 1966098-1966548 bp Feature: domain Description: DUF820 Location: 1 966098-1 966548 bp Feature: gene Location: 1967194-1967570 bp Feature: gene Location: 2053363-2055450 bp Ori: QCW82412.1 Feature: domain Description: NhaP Location: 2053381-2054650 bp Feature: domain Description: NhaP Location: 2053381 -2054650 bp Feature: gene Location: 2055672-2056175 bp Ori: QCW82413.1 Feature: domain Description: YflT Location: 2055705-2055804 bp Feature: domain Description: YflT Location: 2055705-2055804 bp Feature: domain Description: YflT Location: 2055993-2056065 bp Feature: domain Description: YflT Location: 2055993-2056065 bp Feature: gene Location: 2056367-2057545 bp Ori: QCW82414.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2056598-2057219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2056598-205721 9 bp Feature: domain Description: GIIM Note: maturase Location: 2057261-2057489 bp Feature: domain Description: GIIM Note: maturase Location: 2057261 -2057489 bp Feature: gene Location: 2058745-2058831 bp Feature: gene Location: 2059281-2060687 bp Ori: QCW84776.1 Feature: domain Description: NhaD Location: 2059425-2060655 bp Feature: domain Description: NhaD Location: 2059425-2060655 bp Feature: gene Location: 2659615-2659839 bp Feature: gene Location: 2660618-2661124 bp Ori: QCW82867.1 Feature: domain Description: RpoE Location: 2660624-2661107 bp Feature: domain Description: RpoE Location: 2660624-2661 1 07 bp Feature: gene Location: 2661579-2662829 bp Gene: ltrA Feature: domain Description: group_II_RT_mat Note: maturase Location: 2661618-2661705 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2661 61 8-2661 705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2661891-2662440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2661 891 -2662440 bp Feature: domain Description: GIIM Note: maturase Location: 2662521-2662737 bp Feature: domain Description: GIIM Note: maturase Location: 2662521 -2662737 bp Feature: gene Location: 2663419-2663637 bp Ori: QCW82868.1 Feature: domain Description: MbtH Location: 2663434-2663623 bp Feature: domain Description: MbtH Location: 2663434-2663623 bp Feature: gene Location: 2663998-2664351 bp Feature: gene Location: 2674161-2677991 bp Ori: QCW82880.1 Feature: domain Description: PRK12467 Location: 2674167-2675241 bp Feature: domain Description: PRK1 2467 Location: 26741 67-2675241 bp Feature: domain Description: PRK12467 Location: 2675349-2676741 bp Feature: domain Description: PRK1 2467 Location: 2675349-2676741 bp Feature: domain Description: Thioester-redct Location: 2676852-2677926 bp Feature: domain Description: Thioester-redct Location: 2676852-2677926 bp Feature: gene Location: 2677957-2678349 bp Ori: QCW82881.1 Feature: domain Description: PRK12467 Location: 2678074-2678323 bp Feature: domain Description: PRK1 2467 Location: 2678074-2678323 bp Feature: gene Location: 2678602-2679849 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678806-2679460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2678806-2679460 bp Feature: domain Description: GIIM Note: maturase Location: 2679568-2679757 bp Feature: domain Description: GIIM Note: maturase Location: 2679568-2679757 bp Feature: gene Location: 2679922-2680189 bp Feature: gene Location: 2680418-2680867 bp Ori: QCW82882.1 Feature: domain Description: PRK12316 Location: 2680445-2680862 bp Feature: domain Description: PRK1 231 6 Location: 2680445-2680862 bp Feature: gene Location: 2871116-2871856 bp Ori: QCW83018.1 Feature: domain Description: BcsQ Location: 2871119-2871848 bp Feature: domain Description: BcsQ Location: 2871 1 1 9-2871 848 bp Feature: gene Location: 2872307-2873593 bp Ori: QCW83019.1 Feature: domain Description: DDE_Tnp_1 Location: 2872541-2873291 bp Feature: domain Description: DDE_Tnp_1 Location: 2872541 -2873291 bp Feature: gene Location: 2874354-2875532 bp Ori: QCW83020.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2874585-2875206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2874585-2875206 bp Feature: domain Description: GIIM Note: maturase Location: 2875248-2875476 bp Feature: domain Description: GIIM Note: maturase Location: 2875248-2875476 bp Feature: gene Location: 2875911-2876903 bp Ori: QCW83021.1 Feature: domain Description: T_den_put_tspse Location: 2876091-2876217 bp Feature: domain Description: T_den_put_tspse Location: 2876091 -287621 7 bp Feature: domain Description: T_den_put_tspse Location: 2876562-2876760 bp Feature: domain Description: T_den_put_tspse Location: 2876562-2876760 bp Feature: gene Location: 2877456-2877638 bp Ori: QCW83022.1 Feature: domain Description: YcfA Location: 2877459-2877630 bp Feature: domain Description: YcfA Location: 2877459-2877630 bp Feature: gene Location: 4146153-4146734 bp Ori: QCW84020.1 Feature: domain Description: PRK10791 Location: 4146246-4146729 bp Feature: domain Description: PRK1 0791 Location: 41 46246-41 46729 bp Feature: gene Location: 4147244-4147969 bp Ori: QCW84021.1 Gene: lpxH Feature: domain Description: lipid_A_lpxH Location: 4147262-4147949 bp Feature: domain Description: lipid_A_lpxH Location: 41 47262-41 47949 bp Feature: gene Location: 4148499-4149026 bp Ori: QCW84022.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4148502-4148670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 48502-41 48670 bp Feature: domain Description: GIIM Note: maturase Location: 4148715-4148922 bp Feature: domain Description: GIIM Note: maturase Location: 41 4871 5-41 48922 bp Feature: gene Location: 4149201-4149536 bp Feature: gene Location: 4149554-4150570 bp Ori: QCW84024.1 Feature: domain Description: DDE_Tnp_1 Location: 4149599-4150259 bp Feature: domain Description: DDE_Tnp_1 Location: 41 49599-41 50259 bp Feature: gene Location: 4150599-4151234 bp Ori: QCW84914.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4150842-4151220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 50842-41 51 220 bp Feature: gene Location: 4151961-4154399 bp Ori: QCW84025.1 Feature: domain Description: NhaP Location: 4151973-4153200 bp Feature: domain Description: NhaP Location: 41 51 973-41 53200 bp Feature: domain Description: CAP_ED Location: 4154031-4154370 bp Feature: domain Description: CAP_ED Location: 41 54031 -41 54370 bp Feature: gene Location: 4154663-4156516 bp Ori: QCW84026.1 Feature: domain Description: PQQ_MDH Location: 4154783-4156508 bp Feature: domain Description: PQQ_MDH Location: 41 54783-41 56508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), Acetyltransf_18 (pfam18014), DDE_Tnp_Tn3 (pfam01526), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), RVT-UG5, HELICc (smart00490), DUF1998 (pfam09369)
PTPS (pfam01242), Methyltransf_23 (pfam13489), 45_DOPA_Dioxygenase (cd07363), PRK09183 (transposase/IS protein; Provisional), PDDEXK_2 (pfam12784), Yae1_N (pfam09811), PRK01254 (YgiQ family radical SAM protein), DUF29 (pfam01724), cobT_DBIPRT (TIGR03160), arc_metj (LOAD_arc_metj)
DDE_Tnp_1 (pfam01609), PRX_BCP (cd03017), YcfA (COG1724), T_den_put_tspse (TIGR01784), DUF820, NhaP (COG0025), YflT (pfam11181), NhaD (TIGR00775), RpoE (COG3343), MbtH (smart00923)
PRK12467 (peptide synthase; Provisional), Thioester-redct (TIGR01746), PRK12316 (peptide synthase; Provisional), BcsQ (COG1192), PRK10791 (peptidylprolyl isomerase B), lipid_A_lpxH (TIGR01854), CAP_ED (cl00047), PQQ_MDH (cd10278)