myRT

myRT report for GCA_005937845.2_ASM593784v2

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Seq: CP042180.1 Pseudomonas sp. KBS0802 chromosome, complete genome (6200328 bp)
Overview 1 RT 1: 731794-737294 bp 2 RT 2: 1416987-1425332 bp 3 RT 3: 1615990-1620086 bp 4 RT 4: 2262020-2266292 bp 5 RT 5: 2306094-2312760 bp 6 RT 6: 2968951-2971007 bp 7 RT 7: 3058424-3064508 bp 8 RT 8: 4601433-4607491 bp 9 RT 9: 4849588-4857040 bp Neighborhood of RT #1 [731794, 737294] PulF N_methyl Pilin RVT-GII GIIM CSP_CDS Neighborhood of RT #2 [1416987, 1425400] RhtB DUF4223 RVT-GII GIIM PRK05257 RVT-GII GIIM HTH_20 OYE_YqiM_FMN Neighborhood of RT #3 [1615990, 1620103] HTH_3 HTH_3 DDE_Tnp_IS66_C RVT-GII InsE LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #4 [2262020, 2266324] DUF2635 COG4386 RVT-GII GIIM Tail_tube Phage_TAC_7 Neighborhood of RT #5 [2306094, 2312768] CytC galU RVT-GII GIIM PRK06116 PBP2_phosphate_like_1 OmpA_C-like Neighborhood of RT #6 [2968951, 2971042] Ntox46 RVT-GII Tsi6 Neighborhood of RT #7 [3058424, 3064582] LysR oxido_grp_1 RVT-GII GIIM PRK10605 Tas Neighborhood of RT #8 [4601433, 4607499] TonB-siderophor RVT-GII GIIM PRK06213 KOG2848 Neighborhood of RT #9 [4849588, 4857051] mutS1 PreA DUF3470 RVT-GII GIIM PRK05657 nlpD EnvC Feature: gene Location: 731794-733002 bp Ori: QDW55980.1 Feature: domain Description: PulF Location: 731815-733000 bp Feature: domain Description: PulF Location: 731 81 5-733000 bp Feature: gene Location: 733219-733629 bp Ori: QDW55981.1 Feature: domain Description: N_methyl Location: 733222-733300 bp Feature: domain Description: N_methyl Location: 733222-733300 bp Feature: domain Description: Pilin Location: 733324-733621 bp Feature: domain Description: Pilin Location: 733324-733621 bp Feature: gene Location: 734276-735697 bp Ori: QDW55982.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734633-735248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734633-735248 bp Feature: domain Description: GIIM Note: maturase Location: 735302-735530 bp Feature: domain Description: GIIM Note: maturase Location: 735302-735530 bp Feature: gene Location: 735971-736711 bp Ori: QDW55983.1 Feature: domain Description: CSP_CDS Location: 736010-736184 bp Feature: domain Description: CSP_CDS Location: 73601 0-7361 84 bp Feature: gene Location: 736854-737294 bp Feature: gene Location: 1416987-1417604 bp Ori: QDW56571.1 Feature: domain Description: RhtB Location: 1416999-1417596 bp Feature: domain Description: RhtB Location: 1 41 6999-1 41 7596 bp Feature: gene Location: 1417795-1417986 bp Ori: QDW56572.1 Feature: domain Description: DUF4223 Location: 1417798-1417966 bp Feature: domain Description: DUF4223 Location: 1 41 7798-1 41 7966 bp Feature: gene Location: 1418491-1419912 bp Ori: QDW56573.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1418848-1419463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 8848-1 41 9463 bp Feature: domain Description: GIIM Note: maturase Location: 1419517-1419745 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 951 7-1 41 9745 bp Feature: gene Location: 1420234-1421871 bp Ori: QDW56574.1 Gene: mqo Feature: domain Description: PRK05257 Location: 1420309-1421779 bp Feature: domain Description: PRK05257 Location: 1 420309-1 421 779 bp Feature: gene Location: 1422351-1423772 bp Ori: QDW56575.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1422708-1423323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 422708-1 423323 bp Feature: domain Description: GIIM Note: maturase Location: 1423377-1423605 bp Feature: domain Description: GIIM Note: maturase Location: 1 423377-1 423605 bp Feature: gene Location: 1423924-1424259 bp Ori: QDW56576.1 Feature: domain Description: HTH_20 Location: 1424008-1424176 bp Feature: domain Description: HTH_20 Location: 1 424008-1 4241 76 bp Feature: gene Location: 1424309-1425400 bp Ori: QDW56577.1 Feature: domain Description: OYE_YqiM_FMN Location: 1424321-1425332 bp Feature: domain Description: OYE_YqiM_FMN Location: 1 424321 -1 425332 bp Feature: gene Location: 1615990-1616379 bp Ori: QDW56744.1 Feature: domain Description: HTH_3 Location: 1616020-1616107 bp Feature: domain Description: HTH_3 Location: 1 61 6020-1 61 61 07 bp Feature: domain Description: HTH_3 Location: 1616299-1616371 bp Feature: domain Description: HTH_3 Location: 1 61 6299-1 61 6371 bp Feature: gene Location: 1616415-1616516 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1616418-1616484 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 61 641 8-1 61 6484 bp Feature: gene Location: 1616509-1617630 bp Ori: QDW56745.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1616548-1617238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 6548-1 61 7238 bp Feature: gene Location: 1617689-1618557 bp Feature: domain Description: InsE Location: 1617704-1617956 bp Feature: domain Description: InsE Location: 1 61 7704-1 61 7956 bp Feature: gene Location: 1618568-1620103 bp Ori: QDW56746.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1618709-1618919 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 61 8709-1 61 891 9 bp Feature: domain Description: zf-IS66 Location: 1618943-1619069 bp Feature: domain Description: zf-IS66 Location: 1 61 8943-1 61 9069 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1619111-1619954 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 61 91 1 1 -1 61 9954 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1619975-1620086 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 61 9975-1 620086 bp Feature: gene Location: 2262020-2262223 bp Ori: QDW57296.1 Feature: domain Description: DUF2635 Location: 2262038-2262170 bp Feature: domain Description: DUF2635 Location: 2262038-22621 70 bp Feature: gene Location: 2262223-2263710 bp Ori: QDW57297.1 Feature: domain Description: COG4386 Location: 2262226-2263684 bp Feature: domain Description: COG4386 Location: 2262226-2263684 bp Feature: gene Location: 2264180-2265601 bp Ori: QDW57298.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2264537-2265152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2264537-22651 52 bp Feature: domain Description: GIIM Note: maturase Location: 2265206-2265434 bp Feature: domain Description: GIIM Note: maturase Location: 2265206-2265434 bp Feature: gene Location: 2265684-2266031 bp Ori: QDW57299.1 Feature: domain Description: Tail_tube Location: 2265693-2266023 bp Feature: domain Description: Tail_tube Location: 2265693-2266023 bp Feature: gene Location: 2266028-2266324 bp Ori: QDW57300.1 Feature: domain Description: Phage_TAC_7 Location: 2266043-2266292 bp Feature: domain Description: Phage_TAC_7 Location: 2266043-2266292 bp Feature: gene Location: 2306094-2307008 bp Ori: QDW57344.1 Feature: domain Description: CytC Location: 2306157-2306994 bp Feature: domain Description: CytC Location: 23061 57-2306994 bp Feature: gene Location: 2307245-2308084 bp Ori: QDW57345.1 Gene: galU Feature: domain Description: galU Location: 2307254-2308037 bp Feature: domain Description: galU Location: 2307254-2308037 bp Feature: gene Location: 2308558-2309979 bp Ori: QDW57346.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2308915-2309530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230891 5-2309530 bp Feature: domain Description: GIIM Note: maturase Location: 2309584-2309812 bp Feature: domain Description: GIIM Note: maturase Location: 2309584-230981 2 bp Feature: gene Location: 2310102-2311457 bp Ori: QDW57347.1 Gene: gorA Feature: domain Description: PRK06116 Location: 2310105-2311443 bp Feature: domain Description: PRK061 1 6 Location: 231 01 05-231 1 443 bp Feature: gene Location: 2311461-2312768 bp Ori: QDW57348.1 Feature: domain Description: PBP2_phosphate_like_1 Location: 2311530-2312352 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 231 1 530-231 2352 bp Feature: domain Description: OmpA_C-like Location: 2312451-2312760 bp Feature: domain Description: OmpA_C-like Location: 231 2451 -231 2760 bp Feature: gene Location: 2968951-2969148 bp Ori: QDW57915.1 Feature: domain Description: Ntox46 Location: 2968975-2969056 bp Feature: domain Description: Ntox46 Location: 2968975-2969056 bp Feature: gene Location: 2969175-2969486 bp Feature: gene Location: 2969896-2970285 bp Ori: QDW57917.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2969905-2970121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2969905-29701 21 bp Feature: gene Location: 2970231-2970656 bp Feature: gene Location: 2970746-2971042 bp Ori: QDW57918.1 Feature: domain Description: Tsi6 Location: 2970761-2971007 bp Feature: domain Description: Tsi6 Location: 2970761 -2971 007 bp Feature: gene Location: 3058424-3059335 bp Ori: QDW57991.1 Feature: domain Description: LysR Location: 3058448-3059309 bp Feature: domain Description: LysR Location: 3058448-3059309 bp Feature: gene Location: 3059436-3060416 bp Ori: QDW57992.1 Feature: domain Description: oxido_grp_1 Location: 3059448-3060399 bp Feature: domain Description: oxido_grp_1 Location: 3059448-3060399 bp Feature: gene Location: 3060492-3061913 bp Ori: QDW57993.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3060849-3061464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3060849-3061 464 bp Feature: domain Description: GIIM Note: maturase Location: 3061518-3061746 bp Feature: domain Description: GIIM Note: maturase Location: 3061 51 8-3061 746 bp Feature: gene Location: 3062379-3063476 bp Ori: QDW57994.1 Feature: domain Description: PRK10605 Location: 3062385-3063465 bp Feature: domain Description: PRK1 0605 Location: 3062385-3063465 bp Feature: gene Location: 3063572-3064582 bp Ori: QDW57995.1 Feature: domain Description: Tas Location: 3063575-3064508 bp Feature: domain Description: Tas Location: 3063575-3064508 bp Feature: gene Location: 4601433-4603565 bp Ori: QDW59296.1 Feature: domain Description: TonB-siderophor Location: 4601622-4603563 bp Feature: domain Description: TonB-siderophor Location: 4601 622-4603563 bp Feature: gene Location: 4603601-4603678 bp Feature: gene Location: 4603793-4605214 bp Ori: QDW59297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4604150-4604765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46041 50-4604765 bp Feature: domain Description: GIIM Note: maturase Location: 4604819-4605047 bp Feature: domain Description: GIIM Note: maturase Location: 460481 9-4605047 bp Feature: gene Location: 4605976-4606665 bp Ori: QDW59298.1 Feature: domain Description: PRK06213 Location: 4605979-4606660 bp Feature: domain Description: PRK0621 3 Location: 4605979-4606660 bp Feature: gene Location: 4606786-4607499 bp Ori: QDW59299.1 Feature: domain Description: KOG2848 Location: 4606804-4607491 bp Feature: domain Description: KOG2848 Location: 4606804-4607491 bp Feature: gene Location: 4849588-4852161 bp Ori: QDW59514.1 Gene: mutS Feature: domain Description: mutS1 Location: 4849609-4852150 bp Feature: domain Description: mutS1 Location: 4849609-48521 50 bp Feature: gene Location: 4852302-4852625 bp Ori: QDW59515.1 Feature: domain Description: PreA Location: 4852314-4852488 bp Feature: domain Description: PreA Location: 485231 4-4852488 bp Feature: domain Description: DUF3470 Location: 4852500-4852623 bp Feature: domain Description: DUF3470 Location: 4852500-4852623 bp Feature: gene Location: 4853182-4854603 bp Ori: QDW59516.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4853539-4854154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4853539-48541 54 bp Feature: domain Description: GIIM Note: maturase Location: 4854208-4854436 bp Feature: domain Description: GIIM Note: maturase Location: 4854208-4854436 bp Feature: gene Location: 4855078-4856085 bp Ori: QDW59517.1 Gene: rpoS Feature: domain Description: PRK05657 Location: 4855138-4856080 bp Feature: domain Description: PRK05657 Location: 48551 38-4856080 bp Feature: gene Location: 4856194-4857051 bp Ori: QDW60866.1 Feature: domain Description: nlpD Location: 4856317-4856545 bp Feature: domain Description: nlpD Location: 485631 7-4856545 bp Feature: domain Description: EnvC Location: 4856644-4857040 bp Feature: domain Description: EnvC Location: 4856644-4857040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PulF (COG1459), N_methyl (pfam07963), Pilin (pfam00114), RVT-GII, GIIM (pfam08388), CSP_CDS (cd04458), RhtB (COG1280), DUF4223 (pfam13978), PRK05257 (malate:quinone oxidoreductase; Validated), HTH_20 (pfam12840)
OYE_YqiM_FMN (cd02932), HTH_3 (pfam01381), DDE_Tnp_IS66_C (pfam13817), InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DUF2635 (pfam10948), COG4386 (Mu-like prophage tail sheath protein gpL ), Tail_tube (pfam10618)
Phage_TAC_7 (pfam10109), CytC (COG3258), galU (TIGR01099), PRK06116 (glutathione reductase; Validated), PBP2_phosphate_like_1 (cd13653), OmpA_C-like (cl30079), Ntox46 (pfam15538), Tsi6 (pfam18660), LysR (COG0583), oxido_grp_1 (TIGR03558)
PRK10605 (N-ethylmaleimide reductase; Provisional), Tas (COG0667), TonB-siderophor (TIGR01783), PRK06213 (crotonase/enoyl-CoA hydratase family protein), KOG2848 (KOG2848, 1-acyl-sn-glycerol-3-phosphate acyltransferase ), mutS1 (TIGR01070), PreA (COG1146), DUF3470 (pfam11953), PRK05657 (RNA polymerase sigma factor RpoS; Validated), nlpD (PRK10871)
EnvC (COG4942)