myRT

myRT report for GCA_005937895.2_ASM593789v2

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Seq: CP042173.1 Yersinia sp. KBS0713 chromosome, complete genome (4539645 bp)
Overview 1 RT 1: 464615-469947 bp 2 RT 2: 917605-923781 bp 3 RT 3: 1134092-1139688 bp 4 RT 4: 1146648-1152063 bp 5 RT 5: 1595245-1601886 bp 6 RT 6: 2526228-2530314 bp 7 RT 7: 2574600-2577891 bp 8 RT 8: 2617832-2621505 bp 9 RT 9: 2624662-2628459 bp 10 RT 10: 4363587-4369782 bp Neighborhood of RT #1 [464615, 469949] D PRK09678 RVT-GII GIIM PRK11040 Neighborhood of RT #2 [917605, 923786] pgk FTBP_aldolase_II RVT-GII GIIM PRK10334 PRK09304 Neighborhood of RT #3 [1134092, 1139777] PRK02134 Acetyltransf_3 RVT-GII GIIM DUF4225 Neighborhood of RT #4 [1146648, 1152077] PRK09678 RVT-UG3 RVT-UG8 PRK09692 Neighborhood of RT #5 [1595245, 1601903] fruK PRK10712 RVT-GII GIIM PRK01060 YeiH Neighborhood of RT #6 [2526228, 2530316] rrmA YfiH RVT-GII GIIM PRK10943 DUF2527 Neighborhood of RT #7 [2574600, 2577908] tail_comp_S HTH_XRE RVT-Retrons phage_P2_V W Neighborhood of RT #8 [2617832, 2621505] DUF1367 RVT-Retrons DNA_pol3_theta Neighborhood of RT #9 [2624662, 2628459] P22_Cro LexA RVT-GII GIIM Neighborhood of RT #10 [4363587, 4369790] PRK10752 RVT-GII GIIM Bacterial_PFK fieF Feature: gene Location: 464615-465715 bp Ori: QDW31982.1 Feature: domain Description: D Location: 464636-465701 bp Feature: domain Description: D Location: 464636-465701 bp Feature: gene Location: 465790-466005 bp Ori: QDW31983.1 Feature: domain Description: PRK09678 Location: 465793-466003 bp Feature: domain Description: PRK09678 Location: 465793-466003 bp Feature: gene Location: 466477-467829 bp Ori: QDW31984.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466798-467416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466798-46741 6 bp Feature: domain Description: GIIM Note: maturase Location: 467464-467680 bp Feature: domain Description: GIIM Note: maturase Location: 467464-467680 bp Feature: gene Location: 468070-468330 bp Feature: gene Location: 468609-469949 bp Ori: QDW31985.1 Gene: pmbA Feature: domain Description: PRK11040 Location: 468612-469947 bp Feature: domain Description: PRK1 1 040 Location: 46861 2-469947 bp Feature: gene Location: 917605-918768 bp Ori: QDW32335.1 Feature: domain Description: pgk Location: 917617-918754 bp Feature: domain Description: pgk Location: 91 761 7-91 8754 bp Feature: gene Location: 918902-919978 bp Ori: QDW32336.1 Gene: fbaA Feature: domain Description: FTBP_aldolase_II Location: 918956-919970 bp Feature: domain Description: FTBP_aldolase_II Location: 91 8956-91 9970 bp Feature: gene Location: 920444-921796 bp Ori: QDW32337.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920765-921383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920765-921 383 bp Feature: domain Description: GIIM Note: maturase Location: 921431-921647 bp Feature: domain Description: GIIM Note: maturase Location: 921 431 -921 647 bp Feature: gene Location: 922087-922956 bp Ori: QDW32338.1 Gene: mscS Feature: domain Description: PRK10334 Location: 922090-922936 bp Feature: domain Description: PRK1 0334 Location: 922090-922936 bp Feature: gene Location: 923169-923786 bp Ori: QDW32339.1 Gene: argO Feature: domain Description: PRK09304 Location: 923172-923781 bp Feature: domain Description: PRK09304 Location: 9231 72-923781 bp Feature: gene Location: 1134092-1134853 bp Ori: QDW32520.1 Gene: chbG Feature: domain Description: PRK02134 Location: 1134095-1134848 bp Feature: domain Description: PRK021 34 Location: 1 1 34095-1 1 34848 bp Feature: gene Location: 1135106-1135654 bp Ori: QDW32521.1 Feature: domain Description: Acetyltransf_3 Location: 1135136-1135556 bp Feature: domain Description: Acetyltransf_3 Location: 1 1 351 36-1 1 35556 bp Feature: gene Location: 1136472-1137824 bp Ori: QDW32522.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1136793-1137411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 36793-1 1 3741 1 bp Feature: domain Description: GIIM Note: maturase Location: 1137459-1137675 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 37459-1 1 37675 bp Feature: gene Location: 1138648-1138962 bp Feature: gene Location: 1138959-1139777 bp Ori: QDW32524.1 Feature: domain Description: DUF4225 Location: 1139199-1139688 bp Feature: domain Description: DUF4225 Location: 1 1 391 99-1 1 39688 bp Feature: gene Location: 1146648-1146893 bp Ori: QDW32532.1 Feature: domain Description: PRK09678 Location: 1146651-1146807 bp Feature: domain Description: PRK09678 Location: 1 1 46651 -1 1 46807 bp Feature: gene Location: 1147468-1147917 bp Feature: gene Location: 1147899-1148174 bp Ori: QDW32534.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1147905-1148166 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 1 47905-1 1 481 66 bp Feature: gene Location: 1148252-1148722 bp Feature: gene Location: 1148715-1149746 bp Ori: QDW32536.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1149243-1149690 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 1 49243-1 1 49690 bp Feature: gene Location: 1149804-1150682 bp Feature: gene Location: 1150884-1152077 bp Ori: QDW32538.1 Feature: domain Description: PRK09692 Location: 1150887-1152063 bp Feature: domain Description: PRK09692 Location: 1 1 50887-1 1 52063 bp Feature: gene Location: 1595245-1596183 bp Ori: QDW32926.1 Gene: fruK Feature: domain Description: fruK Location: 1595248-1596181 bp Feature: domain Description: fruK Location: 1 595248-1 5961 81 bp Feature: gene Location: 1596198-1597883 bp Ori: QDW32927.1 Gene: fruA Feature: domain Description: PRK10712 Location: 1596201-1597878 bp Feature: domain Description: PRK1 071 2 Location: 1 596201 -1 597878 bp Feature: gene Location: 1598382-1599734 bp Ori: QDW32928.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1598703-1599321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 598703-1 599321 bp Feature: domain Description: GIIM Note: maturase Location: 1599369-1599585 bp Feature: domain Description: GIIM Note: maturase Location: 1 599369-1 599585 bp Feature: gene Location: 1599863-1600708 bp Ori: QDW32929.1 Feature: domain Description: PRK01060 Location: 1599866-1600700 bp Feature: domain Description: PRK01 060 Location: 1 599866-1 600700 bp Feature: gene Location: 1600821-1601903 bp Ori: QDW32930.1 Feature: domain Description: YeiH Location: 1600872-1601886 bp Feature: domain Description: YeiH Location: 1 600872-1 601 886 bp Feature: gene Location: 2526228-2527091 bp Ori: QDW33701.1 Gene: rlmA Feature: domain Description: rrmA Location: 2526231-2527041 bp Feature: domain Description: rrmA Location: 2526231 -2527041 bp Feature: gene Location: 2527288-2528010 bp Ori: QDW33702.1 Gene: pgeF Feature: domain Description: YfiH Location: 2527336-2527957 bp Feature: domain Description: YfiH Location: 2527336-2527957 bp Feature: gene Location: 2528133-2529485 bp Ori: QDW33703.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528454-2529072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528454-2529072 bp Feature: domain Description: GIIM Note: maturase Location: 2529120-2529336 bp Feature: domain Description: GIIM Note: maturase Location: 25291 20-2529336 bp Feature: gene Location: 2529948-2530157 bp Ori: QDW33704.1 Gene: cspE Feature: domain Description: PRK10943 Location: 2529951-2530155 bp Feature: domain Description: PRK1 0943 Location: 2529951 -25301 55 bp Feature: gene Location: 2530200-2530316 bp Ori: QDW33705.1 Feature: domain Description: DUF2527 Location: 2530203-2530314 bp Feature: domain Description: DUF2527 Location: 2530203-253031 4 bp Feature: gene Location: 2574600-2575049 bp Ori: QDW33754.1 Feature: domain Description: tail_comp_S Location: 2574624-2575038 bp Feature: domain Description: tail_comp_S Location: 2574624-2575038 bp Feature: gene Location: 2575595-2575912 bp Ori: QDW33755.1 Feature: domain Description: HTH_XRE Location: 2575610-2575772 bp Feature: domain Description: HTH_XRE Location: 257561 0-2575772 bp Feature: gene Location: 2575887-2576819 bp Ori: QDW33756.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2576064-2576601 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2576064-2576601 bp Feature: gene Location: 2576920-2577561 bp Ori: QDW33757.1 Feature: domain Description: phage_P2_V Location: 2576956-2577550 bp Feature: domain Description: phage_P2_V Location: 2576956-2577550 bp Feature: gene Location: 2577558-2577908 bp Ori: QDW33758.1 Feature: domain Description: W Location: 2577585-2577891 bp Feature: domain Description: W Location: 2577585-2577891 bp Feature: gene Location: 2617832-2618425 bp Ori: QDW33807.1 Feature: domain Description: DUF1367 Location: 2617835-2618417 bp Feature: domain Description: DUF1 367 Location: 261 7835-261 841 7 bp Feature: gene Location: 2618533-2619261 bp Feature: gene Location: 2619258-2620322 bp Ori: QDW35529.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2619303-2619864 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 261 9303-261 9864 bp Feature: gene Location: 2620869-2621120 bp Ori: QDW33809.1 Feature: domain Description: DNA_pol3_theta Location: 2620911-2621097 bp Feature: domain Description: DNA_pol3_theta Location: 262091 1 -2621 097 bp Feature: gene Location: 2621125-2621505 bp Feature: gene Location: 2624662-2624847 bp Ori: QDW33815.1 Feature: domain Description: P22_Cro Location: 2624671-2624839 bp Feature: domain Description: P22_Cro Location: 2624671 -2624839 bp Feature: gene Location: 2624952-2625602 bp Ori: QDW35530.1 Feature: domain Description: LexA Location: 2624976-2625597 bp Feature: domain Description: LexA Location: 2624976-2625597 bp Feature: gene Location: 2625937-2627289 bp Ori: QDW33816.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2626258-2626876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2626258-2626876 bp Feature: domain Description: GIIM Note: maturase Location: 2626924-2627140 bp Feature: domain Description: GIIM Note: maturase Location: 2626924-26271 40 bp Feature: gene Location: 2627853-2628188 bp Feature: gene Location: 2628211-2628459 bp Feature: gene Location: 4363587-4364375 bp Feature: gene Location: 4364583-4365572 bp Ori: QDW35218.1 Feature: domain Description: PRK10752 Location: 4364586-4365570 bp Feature: domain Description: PRK1 0752 Location: 4364586-4365570 bp Feature: gene Location: 4365850-4367202 bp Ori: QDW35219.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4366171-4366789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43661 71 -4366789 bp Feature: domain Description: GIIM Note: maturase Location: 4366837-4367053 bp Feature: domain Description: GIIM Note: maturase Location: 4366837-4367053 bp Feature: gene Location: 4367669-4368652 bp Ori: QDW35220.1 Gene: pfkA Feature: domain Description: Bacterial_PFK Location: 4367678-4368647 bp Feature: domain Description: Bacterial_PFK Location: 4367678-4368647 bp Feature: gene Location: 4368888-4369790 bp Ori: QDW35221.1 Gene: fieF Feature: domain Description: fieF Location: 4368891-4369782 bp Feature: domain Description: fieF Location: 4368891 -4369782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-GII, GIIM (pfam08388), PRK11040 (peptidase PmbA; Provisional), pgk (PRK00073), FTBP_aldolase_II (cd00453), PRK10334 (small-conductance mechanosensitive channel MscS), PRK09304 (arginine exporter ArgO), PRK02134 (chitin disaccharide deacetylase)
Acetyltransf_3 (pfam13302), DUF4225 (pfam13988), RVT-UG3, RVT-UG8, PRK09692 (Integrase; provisional), fruK (PRK09513), PRK10712 (PTS system fructose-specific transporter subunits IIBC; Provisional), PRK01060 (endonuclease IV; Provisional), YeiH (COG2855), rrmA (PRK11088)
YfiH (COG1496), PRK10943 (cold shock-like protein CspC; Provisional), DUF2527 (pfam10736), tail_comp_S (TIGR01635), HTH_XRE (smart00530), RVT-Retrons, phage_P2_V (TIGR01644), W (PHA02516), DUF1367 (pfam07105), DNA_pol3_theta (pfam06440)
P22_Cro (pfam14549), LexA (COG1974), PRK10752 (sulfate ABC transporter substrate-binding protein), Bacterial_PFK (cd00763), fieF (PRK09509)