myRT

myRT report for GCA_005944305.1_ASM594430v1

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Seq: CP040726.1 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM plasmid pKpvST147B_virulence, complete sequence (339117 bp)
Overview 1 RT 1: 297127-301623 bp Neighborhood of RT #1 [297127, 301679] PRK10276 RVT-GII cas7_csf2 Feature: gene Location: 297127-297549 bp Ori: QCX07812.1 Gene: umuD Feature: domain Description: PRK10276 Location: 297133-297535 bp Feature: domain Description: PRK1 0276 Location: 2971 33-297535 bp Feature: gene Location: 297540-297719 bp Feature: gene Location: 297635-299119 bp Ori: QCX07814.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298037-298727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298037-298727 bp Feature: gene Location: 299119-299370 bp Feature: gene Location: 300888-301679 bp Ori: QCX07871.1 Feature: domain Description: cas7_csf2 Location: 301209-301623 bp Feature: domain Description: cas7_csf2 Location: 301 209-301 623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, cas7_csf2 (TIGR03115)

Seq: CP040731.1 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM plasmid unnamed2 (56271 bp)
Overview 1 RT 1: 11027-14477 bp 2 RT 2: 50675-54128 bp Neighborhood of RT #1 [11027, 14515] PRK10276 RVT-GII InsA Rep_3 Neighborhood of RT #2 [50675, 54166] PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Feature: gene Location: 11027-11457 bp Gene: umuD Feature: domain Description: PRK10276 Location: 11078-11324 bp Feature: domain Description: PRK102 76 Location: 11078-1132 4 bp Feature: gene Location: 11615-11866 bp Feature: gene Location: 11866-13350 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12268-12958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 68-12 958 bp Feature: gene Location: 13501-14197 bp Feature: domain Description: InsA Location: 13507-13756 bp Feature: domain Description: InsA Location: 13507-13756 bp Feature: gene Location: 14207-14515 bp Feature: domain Description: Rep_3 Location: 14213-14477 bp Feature: domain Description: Rep_3 Location: 142 13-14477 bp Feature: gene Location: 50675-51106 bp Ori: QCX08093.1 Gene: umuD Feature: domain Description: PRK10276 Location: 50726-51089 bp Feature: domain Description: PRK102 76 Location: 5072 6-51089 bp Feature: gene Location: 51264-51515 bp Feature: gene Location: 51515-52999 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51917-52607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51917-52 607 bp Feature: gene Location: 53151-53848 bp Feature: domain Description: Zn_Tnp_IS1 Location: 53157-53259 bp Feature: domain Description: Zn_Tnp_IS1 Location: 53157-532 59 bp Feature: domain Description: HTH_Tnp_IS1 Location: 53283-53412 bp Feature: domain Description: HTH_Tnp_IS1 Location: 532 83-53412 bp Feature: gene Location: 53858-54166 bp Feature: domain Description: Rep_3 Location: 53864-54128 bp Feature: domain Description: Rep_3 Location: 53864-5412 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759)

Seq: CP040730.1 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM plasmid unnamed1 (79244 bp)
Overview 1 RT 1: 16409-19272 bp 2 RT 2: 51811-56533 bp Neighborhood of RT #1 [16409, 19310] RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Neighborhood of RT #2 [51811, 56571] umuC umuC PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Feature: gene Location: 16409-16660 bp Feature: gene Location: 16657-17384 bp Feature: gene Location: 17407-18261 bp Ori: QCX08048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17431-17752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1743 1-17752 bp Feature: gene Location: 18295-18992 bp Feature: domain Description: Zn_Tnp_IS1 Location: 18301-18403 bp Feature: domain Description: Zn_Tnp_IS1 Location: 183 01-18403 bp Feature: domain Description: HTH_Tnp_IS1 Location: 18424-18556 bp Feature: domain Description: HTH_Tnp_IS1 Location: 18424-18556 bp Feature: gene Location: 19002-19310 bp Feature: domain Description: Rep_3 Location: 19008-19272 bp Feature: domain Description: Rep_3 Location: 19008-19272 bp Feature: gene Location: 51811-53079 bp Feature: domain Description: umuC Location: 51814-52048 bp Feature: domain Description: umuC Location: 51814-52048 bp Feature: domain Description: umuC Location: 52597-53071 bp Feature: domain Description: umuC Location: 52597-53 071 bp Feature: gene Location: 53079-53510 bp Ori: QCX08058.1 Gene: umuD Feature: domain Description: PRK10276 Location: 53130-53493 bp Feature: domain Description: PRK10276 Location: 53 13 0-53 493 bp Feature: gene Location: 53921-55405 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54323-55013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543 23 -55013 bp Feature: gene Location: 55556-56253 bp Feature: domain Description: Zn_Tnp_IS1 Location: 55562-55664 bp Feature: domain Description: Zn_Tnp_IS1 Location: 55562-55664 bp Feature: domain Description: HTH_Tnp_IS1 Location: 55685-55817 bp Feature: domain Description: HTH_Tnp_IS1 Location: 55685-55817 bp Feature: gene Location: 56263-56571 bp Feature: domain Description: Rep_3 Location: 56269-56533 bp Feature: domain Description: Rep_3 Location: 56269-5653 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP040724.1 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM chromosome, complete genome (5433031 bp)
Overview 1 RT 1: 1002166-1008131 bp 2 RT 2: 2229774-2232832 bp 3 RT 3: 5055051-5059158 bp 4 RT 4: 5224747-5232502 bp Neighborhood of RT #1 [1002166, 1008307] AAA_15 HTH_23 HTH_33 DDE_3 RVT-Retrons Nuc_deoxyrib_tr Neighborhood of RT #2 [2229774, 2232834] RVT-Retrons HTH_XRE DinI Neighborhood of RT #3 [5055051, 5059160] DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [5224747, 5232504] RVT-GII PRK10276 umuC RVT-UG11 PRK09951 PRK15110 Feature: gene Location: 1002166-1004412 bp Ori: QCX03332.1 Feature: domain Description: AAA_15 Location: 1002169-1003177 bp Feature: domain Description: AAA_15 Location: 1002169-1003177 bp Feature: gene Location: 1004449-1005480 bp Ori: QCX03333.1 Feature: domain Description: HTH_23 Location: 1004527-1004668 bp Feature: domain Description: HTH_23 Location: 1004 527-1004 668 bp Feature: domain Description: HTH_33 Location: 1004773-1004920 bp Feature: domain Description: HTH_33 Location: 1004 773-1004 920 bp Feature: domain Description: DDE_3 Location: 1004980-1005394 bp Feature: domain Description: DDE_3 Location: 1004 980-1005394 bp Feature: gene Location: 1005682-1006782 bp Ori: QCX03334.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1005862-1006396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1005862-1006396 bp Feature: gene Location: 1007263-1007418 bp Feature: gene Location: 1007438-1008307 bp Ori: QCX03335.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1007960-1008131 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1007960-1008131 bp Feature: gene Location: 2229774-2229968 bp Feature: gene Location: 2229967-2230398 bp Feature: gene Location: 2230537-2231487 bp Ori: QCX04433.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2230717-2231260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2230717-2231260 bp Feature: gene Location: 2231465-2231773 bp Ori: QCX04434.1 Feature: domain Description: HTH_XRE Location: 2231477-2231642 bp Feature: domain Description: HTH_XRE Location: 22314 77-223164 2 bp Feature: gene Location: 2232394-2232834 bp Ori: QCX04435.1 Feature: domain Description: DinI Location: 2232649-2232832 bp Feature: domain Description: DinI Location: 223264 9-2232832 bp Feature: gene Location: 5055051-5055293 bp Ori: QCX06910.1 Feature: domain Description: DinI Location: 5055102-5055282 bp Feature: domain Description: DinI Location: 5055102-5055282 bp Feature: gene Location: 5055660-5055911 bp Feature: gene Location: 5055911-5057394 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5056313-5056451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5056313-50564 51 bp Feature: gene Location: 5057473-5057892 bp Ori: QCX06912.1 Gene: umuD Feature: domain Description: PRK10276 Location: 5057476-5057887 bp Feature: domain Description: PRK10276 Location: 50574 76-5057887 bp Feature: gene Location: 5057895-5059160 bp Ori: QCX06913.1 Feature: domain Description: umuC Location: 5057898-5059158 bp Feature: domain Description: umuC Location: 5057898-5059158 bp Feature: gene Location: 5224747-5224836 bp Feature: gene Location: 5225382-5225633 bp Feature: gene Location: 5225754-5227118 bp Ori: QCX07079.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5226036-5226726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5226036-5226726 bp Feature: gene Location: 5227198-5227617 bp Ori: QCX07080.1 Gene: umuD Feature: domain Description: PRK10276 Location: 5227201-5227612 bp Feature: domain Description: PRK10276 Location: 5227201-5227612 bp Feature: gene Location: 5227619-5228884 bp Ori: QCX07081.1 Feature: domain Description: umuC Location: 5227622-5228882 bp Feature: domain Description: umuC Location: 5227622-5228882 bp Feature: gene Location: 5229557-5230465 bp Ori: QCX07082.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 5229830-5230286 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 5229830-5230286 bp Feature: gene Location: 5230666-5231334 bp Ori: QCX07083.1 Feature: domain Description: PRK09951 Location: 5230669-5231332 bp Feature: domain Description: PRK09951 Location: 5230669-5231332 bp Feature: gene Location: 5231539-5232504 bp Ori: QCX07084.1 Gene: sapB Feature: domain Description: PRK15110 Location: 5231542-5232502 bp Feature: domain Description: PRK15110 Location: 523154 2-5232502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_XRE (smart00530), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)
umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)