myRT

myRT report for GCA_005960425.1_ASM596042v1

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Seq: CP040698.1 Citrobacter freundii strain R47 chromosome R47, complete sequence (4952107 bp)
Overview 1 RT 1: 369-5956 bp 2 RT 2: 3429772-3433652 bp 3 RT 3: 3453938-3461366 bp Neighborhood of RT #1 [369, 6012] PRK09692 RVT-UG8 RVT-UG3 Psu PRK09678 Neighborhood of RT #2 [3429772, 3433666] DUF4406 RVT-AbiP2 HTH_XRE Cro Neighborhood of RT #3 [3453938, 3461445] AdoMet_MTases PRTases_typeI tail-700 tail-700 RVT-Retrons PRK09951 Feature: gene Location: 369-1565 bp Ori: QCW53082.1 Feature: domain Description: PRK09692 Location: 372-1554 bp Feature: domain Description: PRK09692 Location: 372-1 554 bp Feature: gene Location: 1713-3665 bp Ori: QCW53083.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2241-2694 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2241 -2694 bp Feature: gene Location: 3658-4920 bp Ori: QCW53084.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3943-4441 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3943-4441 bp Feature: gene Location: 5191-5757 bp Ori: QCW53085.1 Feature: domain Description: Psu Location: 5212-5752 bp Feature: domain Description: Psu Location: 521 2-5752 bp Feature: gene Location: 5773-6012 bp Ori: QCW53086.1 Feature: domain Description: PRK09678 Location: 5776-5956 bp Feature: domain Description: PRK09678 Location: 5776-5956 bp Feature: gene Location: 3429772-3430068 bp Feature: gene Location: 3430128-3430336 bp Feature: domain Description: DUF4406 Location: 3430137-3430329 bp Feature: domain Description: DUF4406 Location: 34301 37-3430329 bp Feature: gene Location: 3430503-3432002 bp Ori: QCW56081.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3430935-3431391 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3430935-3431 391 bp Feature: gene Location: 3432690-3433382 bp Ori: QCW56082.1 Feature: domain Description: HTH_XRE Location: 3432735-3432912 bp Feature: domain Description: HTH_XRE Location: 3432735-343291 2 bp Feature: gene Location: 3433475-3433666 bp Ori: QCW56083.1 Feature: domain Description: Cro Location: 3433478-3433652 bp Feature: domain Description: Cro Location: 3433478-3433652 bp Feature: gene Location: 3453938-3457315 bp Ori: QCW56106.1 Feature: domain Description: AdoMet_MTases Location: 3453947-3454391 bp Feature: domain Description: AdoMet_MTases Location: 3453947-3454391 bp Feature: domain Description: PRTases_typeI Location: 3454646-3454919 bp Feature: domain Description: PRTases_typeI Location: 3454646-345491 9 bp Feature: domain Description: tail-700 Location: 3456659-3457277 bp Feature: domain Description: tail-700 Location: 3456659-3457277 bp Feature: gene Location: 3457279-3458841 bp Ori: QCW56107.1 Feature: domain Description: tail-700 Location: 3457282-3458791 bp Feature: domain Description: tail-700 Location: 3457282-3458791 bp Feature: gene Location: 3459155-3460339 bp Ori: QCW56108.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3459302-3459881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3459302-3459881 bp Feature: gene Location: 3460336-3461037 bp Feature: gene Location: 3461255-3461445 bp Feature: domain Description: PRK09951 Location: 3461261-3461366 bp Feature: domain Description: PRK09951 Location: 3461 261 -3461 366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG8, RVT-UG3, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), DUF4406 (pfam14359), RVT-AbiP2, HTH_XRE (smart00530), Cro (pfam09048), AdoMet_MTases (cl17173)
PRTases_typeI (cl00309), tail-700 (NF032893), RVT-Retrons, PRK09951 (hypothetical protein; Provisional)

Seq: CP040697.1 Citrobacter freundii strain R47 plasmid pR47-54, complete sequence (53964 bp)
Overview 1 RT 1: 14896-18638 bp Neighborhood of RT #1 [14896, 18655] ArdC RVT-GII PRK10276 Feature: gene Location: 14896-15861 bp Ori: QCW53029.1 Feature: domain Description: ArdC Location: 15022-15856 bp Feature: domain Description: ArdC Location: 1502 2 -15856 bp Feature: gene Location: 16069-16338 bp Feature: gene Location: 16331-17815 bp Ori: QCW53078.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16733-17423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16733-1742 3 bp Feature: gene Location: 17815-18066 bp Feature: gene Location: 18224-18655 bp Ori: QCW53032.1 Gene: umuD Feature: domain Description: PRK10276 Location: 18275-18638 bp Feature: domain Description: PRK102 76 Location: 182 75-18638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)