myRT

myRT report for GCA_006007925.1_ASM600792v1

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Seq: CP040741.1 Enterococcus faecium strain VRE1 plasmid pVRE1-1, complete sequence (238664 bp)
Overview 1 RT 1: 27582-33435 bp Neighborhood of RT #1 [27582, 33554] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 27582-29276 bp Ori: QCX23208.1 Feature: domain Description: VirB4 Location: 27900-28584 bp Feature: domain Description: VirB4 Location: 27900-28584 bp Feature: gene Location: 29544-29777 bp Feature: gene Location: 29964-31841 bp Ori: QCX23210.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30279-31017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30279-31 01 7 bp Feature: domain Description: HNHc Note: nucleases Location: 31575-31728 bp Feature: domain Description: HNHc Note: nucleases Location: 31 575-31 728 bp Feature: gene Location: 31972-32349 bp Feature: gene Location: 32349-33554 bp Ori: QCX23211.1 Feature: domain Description: Glucosaminidase Location: 32625-33021 bp Feature: domain Description: Glucosaminidase Location: 32625-33021 bp Feature: domain Description: Peptidase_M23 Location: 33198-33435 bp Feature: domain Description: Peptidase_M23 Location: 331 98-33435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: CP040740.1 Enterococcus faecium strain VRE1 chromosome, complete genome (2718395 bp)
Overview 1 RT 1: 2589110-2593914 bp Neighborhood of RT #1 [2589110, 2593928] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 2589110-2590294 bp Ori: QCX22989.1 Feature: domain Description: HTH_XRE Location: 2589140-2589284 bp Feature: domain Description: HTH_XRE Location: 2 589140-2 5892 84 bp Feature: domain Description: Rol_Rep_N Location: 2589317-2589581 bp Feature: domain Description: Rol_Rep_N Location: 2 589317-2 589581 bp Feature: domain Description: Rep_trans Location: 2589605-2590217 bp Feature: domain Description: Rep_trans Location: 2 589605-2 5902 17 bp Feature: gene Location: 2590291-2590428 bp Ori: QCX22990.1 Feature: domain Description: DUF3789 Location: 2590318-2590411 bp Feature: domain Description: DUF3789 Location: 2 590318-2 590411 bp Feature: gene Location: 2591174-2593084 bp Ori: QCX22991.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2591507-2592245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 591507-2 592 2 45 bp Feature: domain Description: HNHc Note: nucleases Location: 2592800-2592965 bp Feature: domain Description: HNHc Note: nucleases Location: 2 592 800-2 592 965 bp Feature: gene Location: 2593188-2593412 bp Feature: gene Location: 2593425-2593928 bp Ori: QCX22992.1 Feature: domain Description: ArdA Location: 2593443-2593914 bp Feature: domain Description: ArdA Location: 2 593443-2 593914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), ArdA (pfam07275)