myRT

myRT report for GCA_006088715.1_ASM608871v1

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Seq: CP030772.1 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence (967890 bp)
Overview 1 RT 1: 351118-369726 bp Neighborhood of RT #1 [351118, 369872] entF entF PKS_TE DDE_3 RVT-GII Intron_maturas2 HNHc HNH RVT_N RVT-GII GIIM RVT-GII PinE Zn_ribbon_recom HTH_17 HTH_17 HTH_17 DUF5372 RVT-GII HTH_Tnp_1 PHA02517 Feature: gene Location: 351118-358428 bp Ori: QCX82436.1 Gene: dhbF12 Feature: domain Description: entF Location: 351157-354307 bp Feature: domain Description: entF Location: 351 1 57-354307 bp Feature: domain Description: entF Location: 354382-357892 bp Feature: domain Description: entF Location: 354382-357892 bp Feature: domain Description: PKS_TE Location: 358159-358387 bp Feature: domain Description: PKS_TE Location: 3581 59-358387 bp Feature: gene Location: 358755-359000 bp Ori: QCX82437.1 Feature: domain Description: DDE_3 Location: 358767-358902 bp Feature: domain Description: DDE_3 Location: 358767-358902 bp Feature: gene Location: 359129-360916 bp Ori: QCX82438.1 Gene: ltrA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359390-360182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359390-3601 82 bp Feature: domain Description: Intron_maturas2 Location: 360284-360518 bp Feature: domain Description: Intron_maturas2 Location: 360284-36051 8 bp Feature: domain Description: HNHc Note: nucleases Location: 360683-360872 bp Feature: domain Description: HNHc Note: nucleases Location: 360683-360872 bp Feature: gene Location: 361479-361919 bp Ori: QCX82439.1 Feature: domain Description: HNH Note: nucleases Location: 361773-361875 bp Feature: domain Description: HNH Note: nucleases Location: 361 773-361 875 bp Feature: gene Location: 362358-364127 bp Ori: QCX82440.1 Gene: ltrA2 Feature: domain Description: RVT_N Location: 362433-362679 bp Feature: domain Description: RVT_N Location: 362433-362679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362730-363384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362730-363384 bp Feature: domain Description: GIIM Note: maturase Location: 363453-363687 bp Feature: domain Description: GIIM Note: maturase Location: 363453-363687 bp Feature: gene Location: 364726-365376 bp Ori: QCX82441.1 Gene: ltrA3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364729-365311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364729-36531 1 bp Feature: gene Location: 365420-368143 bp Ori: QCX82442.1 Feature: domain Description: PinE Location: 365465-366062 bp Feature: domain Description: PinE Location: 365465-366062 bp Feature: domain Description: Zn_ribbon_recom Location: 366407-366569 bp Feature: domain Description: Zn_ribbon_recom Location: 366407-366569 bp Feature: domain Description: HTH_17 Location: 367265-367376 bp Feature: domain Description: HTH_1 7 Location: 367265-367376 bp Feature: domain Description: HTH_17 Location: 367481-367583 bp Feature: domain Description: HTH_1 7 Location: 367481 -367583 bp Feature: domain Description: HTH_17 Location: 367934-368036 bp Feature: domain Description: HTH_1 7 Location: 367934-368036 bp Feature: gene Location: 368274-368537 bp Ori: QCX82443.1 Feature: domain Description: DUF5372 Location: 368292-368436 bp Feature: domain Description: DUF5372 Location: 368292-368436 bp Feature: gene Location: 368560-368721 bp Ori: QCX82444.1 Gene: ltrA4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368668-368716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368668-36871 6 bp Feature: gene Location: 368779-369075 bp Ori: QCX82445.1 Feature: domain Description: HTH_Tnp_1 Location: 368788-369025 bp Feature: domain Description: HTH_Tnp_1 Location: 368788-369025 bp Feature: gene Location: 369093-369872 bp Ori: QCX82446.1 Feature: domain Description: PHA02517 Location: 369168-369726 bp Feature: domain Description: PHA0251 7 Location: 3691 68-369726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT entF (PRK10252), PKS_TE (smart00824), DDE_3 (pfam13358), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HNH (pfam01844), RVT_N (pfam13655), GIIM (pfam08388), PinE (COG1961)
Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), DUF5372 (pfam17342), HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed)