myRT

myRT report for GCA_006094435.1_ASM609443v1

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Seq: CP034783.1 Pseudomonas sp. MPC6 chromosome, complete genome (6841168 bp)
Overview 1 RT 1: 2190940-2195339 bp Neighborhood of RT #1 [2190940, 2195449] RVT-GII NorD MoxR Feature: gene Location: 2190940-2191278 bp Feature: gene Location: 2191349-2191709 bp Feature: gene Location: 2191775-2192565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2191922-2192231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 91 922-21 92231 bp Feature: gene Location: 2192615-2194633 bp Ori: QCY11538.1 Feature: domain Description: NorD Location: 2192720-2194625 bp Feature: domain Description: NorD Location: 21 92720-21 94625 bp Feature: gene Location: 2194634-2195449 bp Ori: QCY15445.1 Feature: domain Description: MoxR Location: 2194673-2195339 bp Feature: domain Description: MoxR Location: 21 94673-21 95339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, NorD (COG4548), MoxR (COG0714)

Seq: CP034782.1 Pseudomonas sp. MPC6 plasmid pMPC6-328K, complete sequence (328214 bp)
Overview 1 RT 1: 27632-33839 bp 2 RT 2: 100327-104711 bp 3 RT 3: 118716-124379 bp Neighborhood of RT #1 [27632, 34456] IstB_IS21_ATP IstB_IS21 COG4584 COG4584 RVT-GII TrwB TrwB SXT_TraD SXT_TraD Neighborhood of RT #2 [100327, 104713] HTH_32 HTH_32 DDE_3 DDE_Tnp_1 RVT_N RVT-GII GIIM IS5 Neighborhood of RT #3 [118716, 124390] Zn_Tnp_IS1595 IS5 RVT_N RVT-GII GIIM IS5 PRK07046 Feature: gene Location: 27632-28387 bp Ori: QCY09370.1 Feature: domain Description: IstB_IS21_ATP Location: 27704-27788 bp Feature: domain Description: IstB_IS2 1_ATP Location: 2 7704-2 7788 bp Feature: domain Description: IstB_IS21 Location: 27794-28319 bp Feature: domain Description: IstB_IS2 1 Location: 2 7794-2 8319 bp Feature: gene Location: 28408-29922 bp Ori: QCY09371.1 Feature: domain Description: COG4584 Location: 28510-29290 bp Feature: domain Description: COG4584 Location: 2 8510-2 92 90 bp Feature: domain Description: COG4584 Location: 29356-29809 bp Feature: domain Description: COG4584 Location: 2 9356-2 9809 bp Feature: gene Location: 30095-30619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30299-30593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 99-30593 bp Feature: gene Location: 30851-32221 bp Ori: QCY09372.1 Feature: domain Description: TrwB Location: 30935-31049 bp Feature: domain Description: TrwB Location: 30935-31049 bp Feature: domain Description: TrwB Location: 31814-32072 bp Feature: domain Description: TrwB Location: 31814-32 072 bp Feature: gene Location: 32234-34456 bp Ori: QCY09373.1 Feature: domain Description: SXT_TraD Location: 32654-32876 bp Feature: domain Description: SXT_TraD Location: 32 654-32 876 bp Feature: domain Description: SXT_TraD Location: 33596-33839 bp Feature: domain Description: SXT_TraD Location: 33596-33839 bp Feature: gene Location: 100327-101412 bp Ori: QCY09426.1 Feature: domain Description: HTH_32 Location: 100333-100435 bp Feature: domain Description: HTH_32 Location: 100333-100435 bp Feature: domain Description: HTH_32 Location: 100510-100723 bp Feature: domain Description: HTH_32 Location: 100510-10072 3 bp Feature: domain Description: DDE_3 Location: 100846-101281 bp Feature: domain Description: DDE_3 Location: 100846-1012 81 bp Feature: gene Location: 101557-101991 bp Feature: domain Description: DDE_Tnp_1 Location: 101560-101953 bp Feature: domain Description: DDE_Tnp_1 Location: 101560-101953 bp Feature: gene Location: 102103-103560 bp Ori: QCY09427.1 Gene: ltrA Feature: domain Description: RVT_N Location: 102151-102388 bp Feature: domain Description: RVT_N Location: 102 151-102 388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102439-103081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 439-103081 bp Feature: domain Description: GIIM Note: maturase Location: 103135-103366 bp Feature: domain Description: GIIM Note: maturase Location: 103135-103366 bp Feature: gene Location: 103643-103906 bp Feature: gene Location: 104168-104713 bp Feature: domain Description: IS5 Location: 104357-104711 bp Feature: domain Description: IS5 Location: 104357-104711 bp Feature: gene Location: 118716-119201 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 118785-118917 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 118785-118917 bp Feature: gene Location: 119414-119935 bp Feature: domain Description: IS5 Location: 119603-119936 bp Feature: domain Description: IS5 Location: 119603-119936 bp Feature: gene Location: 120540-122045 bp Ori: QCY09613.1 Gene: ltrA Feature: domain Description: RVT_N Location: 120630-120849 bp Feature: domain Description: RVT_N Location: 12 0630-12 0849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120897-121539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0897-12 1539 bp Feature: domain Description: GIIM Note: maturase Location: 121590-121824 bp Feature: domain Description: GIIM Note: maturase Location: 12 1590-12 182 4 bp Feature: gene Location: 122118-122576 bp Feature: domain Description: IS5 Location: 122124-122544 bp Feature: domain Description: IS5 Location: 12 2 12 4-12 2 544 bp Feature: gene Location: 122798-124390 bp Ori: QCY09439.1 Feature: domain Description: PRK07046 Location: 123011-124379 bp Feature: domain Description: PRK07046 Location: 12 3011-12 4379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), RVT-GII, TrwB, SXT_TraD (TIGR03743), HTH_32 (pfam13565), DDE_3 (pfam13358), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655)
GIIM (pfam08388), IS5 (COG3039), Zn_Tnp_IS1595 (pfam12760), PRK07046 (aminotransferase; Validated)