myRT

myRT report for GCA_006159205.1_ASM615920v1

Download annotations/find similar RTs

Seq: CP040812.1 Antarcticibacterium flavum strain KCTC 52984 chromosome, complete genome (4353683 bp)
Overview 1 RT 1: 523215-530426 bp 2 RT 2: 582993-592526 bp 3 RT 3: 933342-940608 bp 4 RT 4: 1862902-1867786 bp 5 RT 5: 1926406-1934208 bp 6 RT 6: 3276305-3282165 bp Neighborhood of RT #1 [523215, 530426] Orn_aminotrans dass RVT-GII GIIM TrmA Neighborhood of RT #2 [582993, 592597] DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-UG12 DUF772 DDE_Tnp_1_6 bPH_4 Neighborhood of RT #3 [933342, 940608] GT4_CapM-like RVT-GII GIIM Neighborhood of RT #4 [1862902, 1867842] GDP_FS_SDR_e RVT-GII GIIM GxxExxY gmd Neighborhood of RT #5 [1926406, 1934306] P_estr_lig_assc RVT-GII GIIM PRK09247 Xnuc_lig_assoc Neighborhood of RT #6 [3276305, 3282167] DnaB RVT-GII GIIM KOG3267 rplT Feature: gene Location: 523215-524459 bp Ori: QCY68338.1 Gene: rocD Feature: domain Description: Orn_aminotrans Location: 523242-524442 bp Feature: domain Description: Orn_aminotrans Location: 523242-524442 bp Feature: gene Location: 524660-526087 bp Ori: QCY68339.1 Feature: domain Description: dass Location: 524798-526061 bp Feature: domain Description: dass Location: 524798-526061 bp Feature: gene Location: 526314-527552 bp Ori: QCY68340.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526524-527181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526524-5271 81 bp Feature: domain Description: GIIM Note: maturase Location: 527268-527472 bp Feature: domain Description: GIIM Note: maturase Location: 527268-527472 bp Feature: gene Location: 528478-529887 bp Ori: QCY68341.1 Gene: rlmD Feature: domain Description: TrmA Location: 528511-529861 bp Feature: domain Description: TrmA Location: 52851 1 -529861 bp Feature: gene Location: 529869-530426 bp Feature: gene Location: 582993-587657 bp Ori: QCY68375.1 Feature: domain Description: DUF4011 Location: 583041-583548 bp Feature: domain Description: DUF401 1 Location: 583041 -583548 bp Feature: domain Description: DEXXQc_SF1 Location: 583893-584604 bp Feature: domain Description: DEXXQc_SF1 Location: 583893-584604 bp Feature: domain Description: DEXXQc_SF1 Location: 585588-586044 bp Feature: domain Description: DEXXQc_SF1 Location: 585588-586044 bp Feature: domain Description: KOG1803 Location: 586188-586569 bp Feature: domain Description: KOG1 803 Location: 5861 88-586569 bp Feature: domain Description: MTES_1575 Location: 586707-586998 bp Feature: domain Description: MTES_1 575 Location: 586707-586998 bp Feature: domain Description: DUF3320 Location: 587181-587301 bp Feature: domain Description: DUF3320 Location: 5871 81 -587301 bp Feature: gene Location: 587695-587892 bp Feature: gene Location: 588713-590338 bp Ori: QCY68377.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 589076-589523 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 589076-589523 bp Feature: gene Location: 590525-591952 bp Feature: domain Description: DUF772 Location: 590678-590900 bp Feature: domain Description: DUF772 Location: 590678-590900 bp Feature: domain Description: DDE_Tnp_1_6 Location: 591584-591944 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 591 584-591 944 bp Feature: gene Location: 592127-592597 bp Ori: QCY68378.1 Feature: domain Description: bPH_4 Location: 592301-592526 bp Feature: domain Description: bPH_4 Location: 592301 -592526 bp Feature: gene Location: 933342-934505 bp Ori: QCY68610.1 Feature: domain Description: GT4_CapM-like Location: 933351-934461 bp Feature: domain Description: GT4_CapM-like Location: 933351 -934461 bp Feature: gene Location: 934654-935817 bp Feature: gene Location: 936317-937549 bp Ori: QCY68611.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936527-937184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936527-9371 84 bp Feature: domain Description: GIIM Note: maturase Location: 937271-937487 bp Feature: domain Description: GIIM Note: maturase Location: 937271 -937487 bp Feature: gene Location: 938513-939502 bp Feature: gene Location: 939817-940608 bp Feature: gene Location: 1862902-1863294 bp Feature: gene Location: 1863396-1864367 bp Ori: QCY69291.1 Feature: domain Description: GDP_FS_SDR_e Location: 1863414-1864326 bp Feature: domain Description: GDP_FS_SDR_e Location: 1 86341 4-1 864326 bp Feature: gene Location: 1864477-1865715 bp Ori: QCY69292.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1864687-1865344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 864687-1 865344 bp Feature: domain Description: GIIM Note: maturase Location: 1865431-1865635 bp Feature: domain Description: GIIM Note: maturase Location: 1 865431 -1 865635 bp Feature: gene Location: 1866291-1866662 bp Ori: QCY69293.1 Feature: domain Description: GxxExxY Location: 1866309-1866654 bp Feature: domain Description: GxxExxY Location: 1 866309-1 866654 bp Feature: gene Location: 1866727-1867842 bp Ori: QCY69294.1 Gene: gmd Feature: domain Description: gmd Location: 1866736-1867786 bp Feature: domain Description: gmd Location: 1 866736-1 867786 bp Feature: gene Location: 1926406-1927041 bp Ori: QCY69346.1 Gene: pdeM Feature: domain Description: P_estr_lig_assc Location: 1926424-1927030 bp Feature: domain Description: P_estr_lig_assc Location: 1 926424-1 927030 bp Feature: gene Location: 1927051-1929538 bp Feature: gene Location: 1929726-1930964 bp Ori: QCY69347.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1929936-1930593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 929936-1 930593 bp Feature: domain Description: GIIM Note: maturase Location: 1930680-1930884 bp Feature: domain Description: GIIM Note: maturase Location: 1 930680-1 930884 bp Feature: gene Location: 1931572-1933203 bp Ori: QCY69348.1 Feature: domain Description: PRK09247 Location: 1931575-1933162 bp Feature: domain Description: PRK09247 Location: 1 931 575-1 9331 62 bp Feature: gene Location: 1933227-1934306 bp Ori: QCY69349.1 Feature: domain Description: Xnuc_lig_assoc Location: 1933242-1934208 bp Feature: domain Description: Xnuc_lig_assoc Location: 1 933242-1 934208 bp Feature: gene Location: 3276305-3277864 bp Ori: QCY70470.1 Gene: dnaB Feature: domain Description: DnaB Location: 3276383-3277703 bp Feature: domain Description: DnaB Location: 3276383-3277703 bp Feature: gene Location: 3277944-3279185 bp Feature: gene Location: 3279963-3281201 bp Ori: QCY70471.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3280173-3280830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32801 73-3280830 bp Feature: domain Description: GIIM Note: maturase Location: 3280917-3281121 bp Feature: domain Description: GIIM Note: maturase Location: 328091 7-3281 1 21 bp Feature: gene Location: 3281342-3281764 bp Ori: QCY70472.1 Feature: domain Description: KOG3267 Location: 3281357-3281753 bp Feature: domain Description: KOG3267 Location: 3281 357-3281 753 bp Feature: gene Location: 3281823-3282167 bp Ori: QCY70473.1 Gene: rplT Feature: domain Description: rplT Location: 3281832-3282165 bp Feature: domain Description: rplT Location: 3281 832-32821 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Orn_aminotrans (TIGR01885), dass (TIGR00785), RVT-GII, GIIM (pfam08388), TrmA (COG2265), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784)
RVT-UG12, DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), bPH_4 (pfam06713), GT4_CapM-like (cd03808), GDP_FS_SDR_e (cd05239), GxxExxY (TIGR04256), gmd (TIGR01472), P_estr_lig_assc (TIGR04123), PRK09247 (ATP-dependent DNA ligase; Validated)
Xnuc_lig_assoc (TIGR04122), DnaB (TIGR00665), KOG3267 (KOG3267, Uncharacterized conserved protein ), rplT (PRK05185)