myRT

myRT report for GCA_006280355.1_ASM628035v1

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Seq: CP040850.1 Enterococcus faecium strain F17E0263 plasmid p_unnamned1, complete sequence (207651 bp)
Overview 1 RT 1: 92765-98064 bp Neighborhood of RT #1 [92765, 98064] InsE InsE PHA02517 RVT-UG2 Tra8 Feature: gene Location: 92765-94117 bp Ori: QDA39615.1 Feature: domain Description: InsE Location: 92780-92909 bp Feature: domain Description: InsE Location: 92780-92909 bp Feature: domain Description: InsE Location: 92945-93206 bp Feature: domain Description: InsE Location: 92945-93206 bp Feature: domain Description: PHA02517 Location: 93329-94094 bp Feature: domain Description: PHA0251 7 Location: 93329-94094 bp Feature: gene Location: 94631-94935 bp Feature: gene Location: 95029-96242 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 95089-95929 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 95089-95929 bp Feature: gene Location: 96343-97338 bp Feature: domain Description: Tra8 Location: 96349-97327 bp Feature: domain Description: Tra8 Location: 96349-97327 bp Feature: gene Location: 97396-98064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG2, Tra8 (COG2826)

Seq: CP040851.1 Enterococcus faecium strain F17E0263 plasmid p_unnamned2, complete sequence (63632 bp)
Overview 1 RT 1: 22562-26981 bp 2 RT 2: 44330-51738 bp Neighborhood of RT #1 [22562, 27133] RVT-GII GIIM PRK07275 AbiEii Neighborhood of RT #2 [44330, 52187] DUF5592 RVT-GII GIIM VirD4 VirD4 Feature: gene Location: 22562-22768 bp Feature: gene Location: 23213-23473 bp Feature: gene Location: 23796-25181 bp Ori: QDA39754.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24114-24729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4114-2 472 9 bp Feature: domain Description: GIIM Note: maturase Location: 24789-25002 bp Feature: domain Description: GIIM Note: maturase Location: 2 4789-2 5002 bp Feature: gene Location: 25734-26231 bp Ori: QDA39755.1 Gene: ssb Feature: domain Description: PRK07275 Location: 25737-26229 bp Feature: domain Description: PRK072 75 Location: 2 5737-2 62 2 9 bp Feature: gene Location: 26234-27133 bp Ori: QDA39756.1 Feature: domain Description: AbiEii Location: 26330-26981 bp Feature: domain Description: AbiEii Location: 2 6330-2 6981 bp Feature: gene Location: 44330-44923 bp Feature: gene Location: 44924-45256 bp Ori: QDA39769.1 Feature: domain Description: DUF5592 Location: 44966-45215 bp Feature: domain Description: DUF5592 Location: 44966-452 15 bp Feature: gene Location: 45352-46737 bp Ori: QDA39770.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45670-46285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45670-462 85 bp Feature: domain Description: GIIM Note: maturase Location: 46345-46558 bp Feature: domain Description: GIIM Note: maturase Location: 46345-46558 bp Feature: gene Location: 47203-49581 bp Feature: gene Location: 49578-52187 bp Ori: QDA39772.1 Feature: domain Description: VirD4 Location: 49935-50829 bp Feature: domain Description: VirD4 Location: 49935-5082 9 bp Feature: domain Description: VirD4 Location: 51219-51738 bp Feature: domain Description: VirD4 Location: 512 19-51738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK07275 (single-stranded DNA-binding protein; Provisional), AbiEii (pfam08843), DUF5592, VirD4 (COG3505)