myRT

myRT report for GCA_006304565.1_ASM630456v1

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Seq: CP032163.1 Klebsiella pneumoniae strain XJ-K1 chromosome, complete genome (5454121 bp)
Overview 1 RT 1: 1225231-1230116 bp 2 RT 2: 1389267-1392043 bp 3 RT 3: 1412216-1415060 bp 4 RT 4: 1851711-1856583 bp 5 RT 5: 1872324-1878586 bp 6 RT 6: 3012847-3015355 bp 7 RT 7: 3093731-3097868 bp 8 RT 8: 3246121-3250220 bp 9 RT 9: 3318953-3322359 bp 10 RT 10: 3686149-3690987 bp 11 RT 11: 3775287-3779842 bp Neighborhood of RT #1 [1225231, 1230121] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1389267, 1392043] RVT-GII Neighborhood of RT #3 [1412216, 1415062] RVT-GII PHA02515 Phage_T7_tail Neighborhood of RT #4 [1851711, 1856597] dacD RVT-GII PRK10016 YccC Neighborhood of RT #5 [1872324, 1878586] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #6 [3012847, 3015355] RVT-GII Neighborhood of RT #7 [3093731, 3097868] umuC PRK10276 RVT-GII Neighborhood of RT #8 [3246121, 3250231] umuC PRK10276 RVT-GII DinI Neighborhood of RT #9 [3318953, 3322544] PRK10597 RVT-GII HTH_28 rve Neighborhood of RT #10 [3686149, 3691037] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Neighborhood of RT #11 [3775287, 3779842] UvrB RVT-GII Feature: gene Location: 1225231-1227615 bp Ori: QDA41105.1 Feature: domain Description: Phage_GPA Location: 1225795-1226761 bp Feature: domain Description: Phage_GPA Location: 1 225795-1 226761 bp Feature: gene Location: 1227845-1228096 bp Feature: gene Location: 1228096-1229580 bp Ori: QDA41107.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1228498-1229188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 228498-1 2291 88 bp Feature: gene Location: 1229688-1229876 bp Feature: gene Location: 1229888-1230121 bp Ori: QDA41109.1 Feature: domain Description: DinI Location: 1229933-1230116 bp Feature: domain Description: DinI Location: 1 229933-1 2301 1 6 bp Feature: gene Location: 1389267-1389470 bp Feature: gene Location: 1389463-1389801 bp Feature: gene Location: 1389898-1391382 bp Ori: QDA41268.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1390300-1390990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 390300-1 390990 bp Feature: gene Location: 1391382-1391633 bp Feature: gene Location: 1391786-1392043 bp Feature: gene Location: 1412216-1412491 bp Feature: gene Location: 1412490-1412561 bp Feature: gene Location: 1412554-1414038 bp Ori: QDA41291.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412956-1413646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 2956-1 41 3646 bp Feature: gene Location: 1414038-1414289 bp Feature: gene Location: 1414580-1415062 bp Feature: domain Description: PHA02515 Location: 1414592-1414943 bp Feature: domain Description: PHA0251 5 Location: 1 41 4592-1 41 4943 bp Feature: domain Description: Phage_T7_tail Location: 1414985-1415060 bp Feature: domain Description: Phage_T7_tail Location: 1 41 4985-1 41 5060 bp Feature: gene Location: 1851711-1852880 bp Ori: QDA41653.1 Gene: dacD Feature: domain Description: dacD Location: 1851720-1852875 bp Feature: domain Description: dacD Location: 1 851 720-1 852875 bp Feature: gene Location: 1853150-1853401 bp Feature: gene Location: 1853401-1854885 bp Ori: QDA41655.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853803-1854493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 853803-1 854493 bp Feature: gene Location: 1854967-1855440 bp Ori: QDA41656.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1854970-1855429 bp Feature: domain Description: PRK1 001 6 Location: 1 854970-1 855429 bp Feature: gene Location: 1855539-1856597 bp Ori: QDA41657.1 Feature: domain Description: YccC Location: 1855545-1856583 bp Feature: domain Description: YccC Location: 1 855545-1 856583 bp Feature: gene Location: 1872324-1873427 bp Ori: QDA41676.1 Feature: domain Description: STKc_PknB_like Location: 1872456-1872897 bp Feature: domain Description: STKc_PknB_like Location: 1 872456-1 872897 bp Feature: gene Location: 1873497-1873739 bp Feature: gene Location: 1873986-1875086 bp Ori: QDA41677.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1874169-1874697 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8741 69-1 874697 bp Feature: gene Location: 1875201-1877477 bp Ori: QDA41678.1 Feature: domain Description: AAA_15 Location: 1875234-1876242 bp Feature: domain Description: AAA_1 5 Location: 1 875234-1 876242 bp Feature: gene Location: 1878356-1878586 bp Feature: gene Location: 3012847-3013131 bp Feature: gene Location: 3013145-3013216 bp Feature: gene Location: 3013209-3014693 bp Ori: QDA42728.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3013611-3014301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 361 1 -301 4301 bp Feature: gene Location: 3014693-3014944 bp Feature: gene Location: 3015146-3015355 bp Feature: gene Location: 3093731-3094996 bp Ori: QDA42819.1 Gene: umuC Feature: domain Description: umuC Location: 3093734-3094994 bp Feature: domain Description: umuC Location: 3093734-3094994 bp Feature: gene Location: 3094998-3095417 bp Ori: QDA42820.1 Feature: domain Description: PRK10276 Location: 3095001-3095412 bp Feature: domain Description: PRK1 0276 Location: 3095001 -309541 2 bp Feature: gene Location: 3095496-3096980 bp Ori: QDA42821.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3095898-3096588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3095898-3096588 bp Feature: gene Location: 3096980-3097231 bp Feature: gene Location: 3097779-3097868 bp Feature: gene Location: 3246121-3247386 bp Ori: QDA42970.1 Gene: umuC Feature: domain Description: umuC Location: 3246124-3247384 bp Feature: domain Description: umuC Location: 32461 24-3247384 bp Feature: gene Location: 3247389-3247808 bp Ori: QDA42971.1 Feature: domain Description: PRK10276 Location: 3247392-3247803 bp Feature: domain Description: PRK1 0276 Location: 3247392-3247803 bp Feature: gene Location: 3247887-3249371 bp Ori: QDA42972.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3248289-3248979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3248289-3248979 bp Feature: gene Location: 3249371-3249622 bp Feature: gene Location: 3249989-3250231 bp Ori: QDA42974.1 Feature: domain Description: DinI Location: 3250040-3250220 bp Feature: domain Description: DinI Location: 3250040-3250220 bp Feature: gene Location: 3318953-3319243 bp Feature: gene Location: 3319255-3319488 bp Ori: QDA43046.1 Feature: domain Description: PRK10597 Location: 3319258-3319483 bp Feature: domain Description: PRK1 0597 Location: 331 9258-331 9483 bp Feature: gene Location: 3319567-3321051 bp Ori: QDA43047.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3319969-3320659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 9969-3320659 bp Feature: gene Location: 3321051-3321302 bp Feature: gene Location: 3321498-3322544 bp Ori: QDA43049.1 Feature: domain Description: HTH_28 Location: 3321621-3321741 bp Feature: domain Description: HTH_28 Location: 3321 621 -3321 741 bp Feature: domain Description: rve Location: 3322029-3322359 bp Feature: domain Description: rve Location: 3322029-3322359 bp Feature: gene Location: 3686149-3687027 bp Ori: QDA43396.1 Feature: domain Description: Phage_CI_repr Location: 3686176-3686359 bp Feature: domain Description: Phage_CI_repr Location: 36861 76-3686359 bp Feature: domain Description: Phage_CI_repr Location: 3686488-3686680 bp Feature: domain Description: Phage_CI_repr Location: 3686488-3686680 bp Feature: domain Description: Phage_CI_C Location: 3686707-3687001 bp Feature: domain Description: Phage_CI_C Location: 3686707-3687001 bp Feature: gene Location: 3687039-3687983 bp Feature: gene Location: 3688082-3689566 bp Ori: QDA43398.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3688484-3689174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3688484-36891 74 bp Feature: gene Location: 3689566-3689817 bp Feature: gene Location: 3689985-3691037 bp Ori: QDA43400.1 Feature: domain Description: int Location: 3689988-3690987 bp Feature: domain Description: int Location: 3689988-3690987 bp Feature: gene Location: 3775287-3777308 bp Ori: QDA43482.1 Gene: uvrB Feature: domain Description: UvrB Location: 3775293-3777294 bp Feature: domain Description: UvrB Location: 3775293-3777294 bp Feature: gene Location: 3777519-3777770 bp Feature: gene Location: 3777770-3779254 bp Ori: QDA43484.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3778172-3778862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37781 72-3778862 bp Feature: gene Location: 3779451-3779630 bp Feature: gene Location: 3779630-3779842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), PHA02515 (hypothetical protein; Provisional), Phage_T7_tail (pfam03906), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), HTH_28 (pfam13518), rve (pfam00665), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), UvrB (pfam12344)

Seq: CP032165.1 Klebsiella pneumoniae strain XJ-K1 plasmid unnamed2, complete sequence (130628 bp)
Overview 1 RT 1: 98937-102873 bp 2 RT 2: 121837-126231 bp Neighborhood of RT #1 [98937, 102949] InsE RVT-GII GIIM PHA02517 PRK09413 Neighborhood of RT #2 [121837, 126236] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 98937-99676 bp Feature: domain Description: InsE Location: 98940-99276 bp Feature: domain Description: InsE Location: 98940-992 76 bp Feature: gene Location: 99669-100040 bp Feature: gene Location: 100334-101857 bp Ori: QDA45495.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100607-101339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100607-101339 bp Feature: domain Description: GIIM Note: maturase Location: 101417-101612 bp Feature: domain Description: GIIM Note: maturase Location: 101417-101612 bp Feature: gene Location: 101947-102420 bp Feature: domain Description: PHA02517 Location: 101953-102418 bp Feature: domain Description: PHA02 517 Location: 101953-102 418 bp Feature: gene Location: 102465-102949 bp Feature: domain Description: PRK09413 Location: 102513-102873 bp Feature: domain Description: PRK09413 Location: 102 513-102 873 bp Feature: gene Location: 121837-122031 bp Feature: gene Location: 122012-122455 bp Feature: gene Location: 123409-125310 bp Ori: QDA45521.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123676-124507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3676-12 4507 bp Feature: domain Description: Intron_maturas2 Location: 124621-124879 bp Feature: domain Description: Intron_maturas2 Location: 12 462 1-12 4879 bp Feature: domain Description: HNHc Note: nucleases Location: 125053-125215 bp Feature: domain Description: HNHc Note: nucleases Location: 12 5053-12 52 15 bp Feature: gene Location: 125460-125945 bp Ori: QDA45522.1 Gene: ssb Feature: domain Description: PRK13732 Location: 125463-125943 bp Feature: domain Description: PRK13732 Location: 12 5463-12 5943 bp Feature: gene Location: 126003-126236 bp Ori: QDA45523.1 Feature: domain Description: DUF905 Location: 126033-126231 bp Feature: domain Description: DUF905 Location: 12 6033-12 62 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed), Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP032166.1 Klebsiella pneumoniae strain XJ-K1 plasmid unnamed3, complete sequence (99048 bp)
Overview 1 RT 1: 94271-98352 bp Neighborhood of RT #1 [94271, 98489] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 94271-94702 bp Ori: QDA45642.1 Feature: domain Description: PRK10276 Location: 94322-94685 bp Feature: domain Description: PRK10276 Location: 943 22-94685 bp Feature: gene Location: 94861-95112 bp Feature: gene Location: 95112-96595 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95514-96204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95514-96204 bp Feature: gene Location: 96844-97815 bp Ori: QDA45644.1 Feature: domain Description: StbA Location: 96847-97792 bp Feature: domain Description: StbA Location: 96847-97792 bp Feature: gene Location: 97818-98489 bp Ori: QDA45645.1 Feature: domain Description: Plasmid_stab_B Location: 97833-98040 bp Feature: domain Description: Plasmid_stab_B Location: 9783 3 -98040 bp Feature: domain Description: Plasmid_stab_B Location: 98145-98352 bp Feature: domain Description: Plasmid_stab_B Location: 98145-983 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)