myRT

myRT report for GCA_006401215.1_ASM640121v1

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Seq: CP017170.1 Myxococcus xanthus strain GH5.1.9c20, complete genome (9262965 bp)
Overview 1 RT 1: 148985-161688 bp 2 RT 2: 4999629-5005421 bp 3 RT 3: 7125517-7130764 bp 4 RT 4: 7825019-7831937 bp Neighborhood of RT #1 [148985, 161777] BetA BetA BetA DAP2 RVT-Retrons WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #2 [4999629, 5005480] dgt RVT-GII DDE_Tnp_IS66_C COG5659 Neighborhood of RT #3 [7125517, 7131192] RNase_HI_like COG4127 RVT-Retrons COG4941 LPAM_1 Neighborhood of RT #4 [7825019, 7832119] RVT-Retrons COG3791 EpmB EpmB Feature: gene Location: 148985-150508 bp Ori: QDE94495.1 Feature: domain Description: BetA Location: 149003-149495 bp Feature: domain Description: BetA Location: 1 49003-1 49495 bp Feature: domain Description: BetA Location: 149636-149939 bp Feature: domain Description: BetA Location: 1 49636-1 49939 bp Feature: domain Description: BetA Location: 150074-150488 bp Feature: domain Description: BetA Location: 1 50074-1 50488 bp Feature: gene Location: 150660-151526 bp Ori: QDE94496.1 Feature: domain Description: DAP2 Location: 150786-151503 bp Feature: domain Description: DAP2 Location: 1 50786-1 51 503 bp Feature: gene Location: 151530-152987 bp Ori: QDE94497.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152088-152730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 52088-1 52730 bp Feature: gene Location: 153388-155241 bp Feature: gene Location: 155238-161777 bp Ori: QDE94499.1 Feature: domain Description: WD40 Location: 155400-156096 bp Feature: domain Description: WD40 Location: 1 55400-1 56096 bp Feature: domain Description: HEAT_2 Location: 156318-156531 bp Feature: domain Description: HEAT_2 Location: 1 5631 8-1 56531 bp Feature: domain Description: HEAT_2 Location: 157083-157332 bp Feature: domain Description: HEAT_2 Location: 1 57083-1 57332 bp Feature: domain Description: HEAT_2 Location: 157377-157539 bp Feature: domain Description: HEAT_2 Location: 1 57377-1 57539 bp Feature: domain Description: HEAT_2 Location: 157578-157803 bp Feature: domain Description: HEAT_2 Location: 1 57578-1 57803 bp Feature: domain Description: HEAT_2 Location: 158241-158394 bp Feature: domain Description: HEAT_2 Location: 1 58241 -1 58394 bp Feature: domain Description: HEAT_2 Location: 158502-158664 bp Feature: domain Description: HEAT_2 Location: 1 58502-1 58664 bp Feature: domain Description: HEAT_2 Location: 159024-159213 bp Feature: domain Description: HEAT_2 Location: 1 59024-1 5921 3 bp Feature: domain Description: HEAT_2 Location: 159258-159465 bp Feature: domain Description: HEAT_2 Location: 1 59258-1 59465 bp Feature: domain Description: HEAT_2 Location: 159630-159864 bp Feature: domain Description: HEAT_2 Location: 1 59630-1 59864 bp Feature: domain Description: HEAT_2 Location: 159927-160086 bp Feature: domain Description: HEAT_2 Location: 1 59927-1 60086 bp Feature: domain Description: HEAT_2 Location: 160470-160692 bp Feature: domain Description: HEAT_2 Location: 1 60470-1 60692 bp Feature: domain Description: HEAT_2 Location: 161172-161424 bp Feature: domain Description: HEAT_2 Location: 1 61 1 72-1 61 424 bp Feature: domain Description: HEAT_2 Location: 161550-161688 bp Feature: domain Description: HEAT_2 Location: 1 61 550-1 61 688 bp Feature: gene Location: 4999629-4999904 bp Feature: gene Location: 5000170-5001657 bp Ori: QDE97964.1 Feature: domain Description: dgt Location: 5000185-5001649 bp Feature: domain Description: dgt Location: 50001 85-5001 649 bp Feature: gene Location: 5002323-5003813 bp Ori: QDE97965.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5002731-5003418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5002731 -500341 8 bp Feature: gene Location: 5004298-5004552 bp Ori: QDE97966.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5004385-5004493 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5004385-5004493 bp Feature: gene Location: 5004833-5005480 bp Ori: QDF01337.1 Feature: domain Description: COG5659 Location: 5004836-5005421 bp Feature: domain Description: COG5659 Location: 5004836-5005421 bp Feature: gene Location: 7125517-7126161 bp Ori: QDE99445.1 Feature: domain Description: RNase_HI_like Location: 7125772-7126150 bp Feature: domain Description: RNase_HI_like Location: 71 25772-71 261 50 bp Feature: gene Location: 7126191-7127210 bp Ori: QDF01456.1 Feature: domain Description: COG4127 Location: 7126209-7127196 bp Feature: domain Description: COG41 27 Location: 71 26209-71 271 96 bp Feature: gene Location: 7127226-7128554 bp Ori: QDE99446.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7127670-7128324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 27670-71 28324 bp Feature: gene Location: 7128839-7130119 bp Ori: QDE99447.1 Feature: domain Description: COG4941 Location: 7128863-7130099 bp Feature: domain Description: COG4941 Location: 71 28863-71 30099 bp Feature: gene Location: 7130686-7131192 bp Ori: QDE99448.1 Feature: domain Description: LPAM_1 Location: 7130713-7130764 bp Feature: domain Description: LPAM_1 Location: 71 3071 3-71 30764 bp Feature: gene Location: 7825019-7826929 bp Feature: gene Location: 7826926-7828524 bp Feature: gene Location: 7828703-7829986 bp Ori: QDE99951.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7829168-7829771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78291 68-7829771 bp Feature: gene Location: 7829995-7830414 bp Ori: QDE99952.1 Feature: domain Description: COG3791 Location: 7830019-7830376 bp Feature: domain Description: COG3791 Location: 783001 9-7830376 bp Feature: gene Location: 7830785-7832119 bp Ori: QDE99953.1 Feature: domain Description: EpmB Location: 7830848-7831034 bp Feature: domain Description: EpmB Location: 7830848-7831 034 bp Feature: domain Description: EpmB Location: 7831178-7831937 bp Feature: domain Description: EpmB Location: 7831 1 78-7831 937 bp Sorry, your browser does not support 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Associated domains:myRT BetA (COG2303), DAP2 (COG1506), RVT-Retrons, WD40 (smart00320), HEAT_2 (pfam13646), dgt (PRK04926), RVT-GII, DDE_Tnp_IS66_C (pfam13817), COG5659 (SRSO17 transposase ), RNase_HI_like (cd09279)
COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), LPAM_1 (pfam08139), COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)