myRT

myRT report for GCA_006494715.1_ASM649471v1

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Seq: CP041151.1 Shewanella sp. SNU WT1 chromosome, complete genome (4066222 bp)
Overview 1 RT 1: 1362578-1367908 bp 2 RT 2: 2182886-2188220 bp 3 RT 3: 2243186-2250867 bp 4 RT 4: 2375624-2377998 bp 5 RT 5: 3142864-3149523 bp 6 RT 6: 3195918-3201848 bp 7 RT 7: 3222491-3229765 bp Neighborhood of RT #1 [1362578, 1367932] PRK02101 PHA02517 RVT-GII GIIM InsE InsE Neighborhood of RT #2 [2182886, 2188220] PRK05711 TIGR03503 RVT-GII InsE Neighborhood of RT #3 [2243186, 2250917] PleD PHA02517 RVT-GII GIIM InsE ACCS ACCS KOG3139 Neighborhood of RT #4 [2375624, 2378003] HTH_Tnp_1 RVT-GII GIIM PHA02517 IS285 Neighborhood of RT #5 [3142864, 3149580] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM InsE HTH_Tnp_1 HTH_Tnp_1 Neighborhood of RT #6 [3195918, 3201850] flgF InsE RVT-GII GIIM PHA02517 flgE Neighborhood of RT #7 [3222491, 3229881] CHASE GGDEF PHA02517 RVT-GII GIIM InsE COG5421 Feature: gene Location: 1362578-1363351 bp Ori: QDF66349.1 Gene: yaaA Feature: domain Description: PRK02101 Location: 1362581-1363343 bp Feature: domain Description: PRK021 01 Location: 1 362581 -1 363343 bp Feature: gene Location: 1363377-1363865 bp Feature: domain Description: PHA02517 Location: 1363380-1363842 bp Feature: domain Description: PHA0251 7 Location: 1 363380-1 363842 bp Feature: gene Location: 1363946-1365469 bp Ori: QDF66350.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1364219-1364951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36421 9-1 364951 bp Feature: domain Description: GIIM Note: maturase Location: 1365023-1365224 bp Feature: domain Description: GIIM Note: maturase Location: 1 365023-1 365224 bp Feature: gene Location: 1366134-1366744 bp Feature: domain Description: InsE Location: 1366137-1366347 bp Feature: domain Description: InsE Location: 1 3661 37-1 366347 bp Feature: gene Location: 1367692-1367932 bp Ori: QDF66351.1 Feature: domain Description: InsE Location: 1367704-1367908 bp Feature: domain Description: InsE Location: 1 367704-1 367908 bp Feature: gene Location: 2182886-2183614 bp Ori: QDF66967.1 Gene: dnaQ Feature: domain Description: PRK05711 Location: 2182907-2183609 bp Feature: domain Description: PRK0571 1 Location: 21 82907-21 83609 bp Feature: gene Location: 2183616-2184956 bp Ori: QDF66968.1 Feature: domain Description: TIGR03503 Location: 2183766-2184843 bp Feature: domain Description: TIGR03503 Location: 21 83766-21 84843 bp Feature: gene Location: 2185520-2186086 bp Ori: QDF66969.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2185793-2185976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 85793-21 85976 bp Feature: gene Location: 2186751-2187454 bp Feature: domain Description: InsE Location: 2186754-2187054 bp Feature: domain Description: InsE Location: 21 86754-21 87054 bp Feature: gene Location: 2187588-2188220 bp Feature: gene Location: 2243186-2244241 bp Ori: QDF67014.1 Feature: domain Description: PleD Location: 2243579-2244206 bp Feature: domain Description: PleD Location: 2243579-2244206 bp Feature: gene Location: 2244221-2244709 bp Feature: domain Description: PHA02517 Location: 2244224-2244680 bp Feature: domain Description: PHA0251 7 Location: 2244224-2244680 bp Feature: gene Location: 2244790-2246313 bp Ori: QDF67015.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2245063-2245795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2245063-2245795 bp Feature: domain Description: GIIM Note: maturase Location: 2245867-2246068 bp Feature: domain Description: GIIM Note: maturase Location: 2245867-2246068 bp Feature: gene Location: 2246978-2247681 bp Feature: domain Description: InsE Location: 2246981-2247281 bp Feature: domain Description: InsE Location: 2246981 -2247281 bp Feature: gene Location: 2248176-2250917 bp Ori: QDF67016.1 Feature: domain Description: ACCS Location: 2248191-2248485 bp Feature: domain Description: ACCS Location: 22481 91 -2248485 bp Feature: domain Description: ACCS Location: 2248578-2250141 bp Feature: domain Description: ACCS Location: 2248578-22501 41 bp Feature: domain Description: KOG3139 Location: 2250558-2250867 bp Feature: domain Description: KOG31 39 Location: 2250558-2250867 bp Feature: gene Location: 2375624-2375879 bp Ori: QDF67106.1 Feature: domain Description: HTH_Tnp_1 Location: 2375630-2375840 bp Feature: domain Description: HTH_Tnp_1 Location: 2375630-2375840 bp Feature: gene Location: 2374777-2375624 bp Feature: gene Location: 2375953-2376900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375962-2376382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375962-2376382 bp Feature: domain Description: GIIM Note: maturase Location: 2376454-2376655 bp Feature: domain Description: GIIM Note: maturase Location: 2376454-2376655 bp Feature: gene Location: 2376981-2377448 bp Feature: domain Description: PHA02517 Location: 2376984-2377428 bp Feature: domain Description: PHA0251 7 Location: 2376984-2377428 bp Feature: gene Location: 2377455-2378003 bp Feature: domain Description: IS285 Location: 2377503-2377998 bp Feature: domain Description: IS285 Location: 2377503-2377998 bp Feature: gene Location: 3142864-3144366 bp Ori: QDF67656.1 Feature: domain Description: LZ_Tnp_IS66 Location: 3142969-3143161 bp Feature: domain Description: LZ_Tnp_IS66 Location: 31 42969-31 431 61 bp Feature: domain Description: zf-IS66 Location: 3143179-3143311 bp Feature: domain Description: zf-IS66 Location: 31 431 79-31 4331 1 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3143371-3144223 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 43371 -31 44223 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3144244-3144352 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31 44244-31 44352 bp Feature: gene Location: 3144481-3144969 bp Feature: domain Description: PHA02517 Location: 3144484-3144940 bp Feature: domain Description: PHA0251 7 Location: 31 44484-31 44940 bp Feature: gene Location: 3145050-3146573 bp Ori: QDF67657.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3145323-3146055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 45323-31 46055 bp Feature: domain Description: GIIM Note: maturase Location: 3146127-3146328 bp Feature: domain Description: GIIM Note: maturase Location: 31 461 27-31 46328 bp Feature: gene Location: 3147238-3147941 bp Feature: domain Description: InsE Location: 3147241-3147541 bp Feature: domain Description: InsE Location: 31 47241 -31 47541 bp Feature: gene Location: 3149118-3149580 bp Ori: QDF67658.1 Feature: domain Description: HTH_Tnp_1 Location: 3149124-3149283 bp Feature: domain Description: HTH_Tnp_1 Location: 31 491 24-31 49283 bp Feature: domain Description: HTH_Tnp_1 Location: 3149301-3149523 bp Feature: domain Description: HTH_Tnp_1 Location: 31 49301 -31 49523 bp Feature: gene Location: 3195918-3196661 bp Ori: QDF67703.1 Gene: flgF Feature: domain Description: flgF Location: 3195921-3196659 bp Feature: domain Description: flgF Location: 31 95921 -31 96659 bp Feature: gene Location: 3196815-3197512 bp Feature: domain Description: InsE Location: 3196818-3197115 bp Feature: domain Description: InsE Location: 31 9681 8-31 971 1 5 bp Feature: gene Location: 3198177-3199700 bp Ori: QDF67704.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3198450-3199182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 98450-31 991 82 bp Feature: domain Description: GIIM Note: maturase Location: 3199254-3199455 bp Feature: domain Description: GIIM Note: maturase Location: 31 99254-31 99455 bp Feature: gene Location: 3199781-3200269 bp Feature: domain Description: PHA02517 Location: 3199784-3200246 bp Feature: domain Description: PHA0251 7 Location: 31 99784-3200246 bp Feature: gene Location: 3200489-3201850 bp Ori: QDF67705.1 Gene: flgE Feature: domain Description: flgE Location: 3200492-3201848 bp Feature: domain Description: flgE Location: 3200492-3201 848 bp Feature: gene Location: 3222491-3223834 bp Ori: QDF67722.1 Feature: domain Description: CHASE Location: 3222608-3223292 bp Feature: domain Description: CHASE Location: 3222608-3223292 bp Feature: domain Description: GGDEF Location: 3223364-3223823 bp Feature: domain Description: GGDEF Location: 3223364-3223823 bp Feature: gene Location: 3224158-3224646 bp Feature: domain Description: PHA02517 Location: 3224161-3224623 bp Feature: domain Description: PHA0251 7 Location: 32241 61 -3224623 bp Feature: gene Location: 3224727-3226250 bp Ori: QDF67723.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3225000-3225732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3225000-3225732 bp Feature: domain Description: GIIM Note: maturase Location: 3225804-3226005 bp Feature: domain Description: GIIM Note: maturase Location: 3225804-3226005 bp Feature: gene Location: 3226915-3227612 bp Feature: domain Description: InsE Location: 3226924-3227215 bp Feature: domain Description: InsE Location: 3226924-322721 5 bp Feature: gene Location: 3228268-3229881 bp Ori: QDF67724.1 Feature: domain Description: COG5421 Location: 3228298-3229765 bp Feature: domain Description: COG5421 Location: 3228298-3229765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02101 (peroxide stress protein YaaA), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), PRK05711 (DNA polymerase III subunit epsilon; Provisional), TIGR03503 (TIGR03503 family protein), PleD (COG3706), ACCS (COG1042), KOG3139 (KOG3139, N-acetyltransferase )
HTH_Tnp_1 (pfam01527), IS285 (COG3328), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), flgF (TIGR02490), flgE (PRK12637), CHASE (smart01079), GGDEF (TIGR00254)
COG5421 (Transposase )