myRT

myRT report for GCA_006494895.1_ASM649489v1

Download annotations/find similar RTs

Seq: CP033958.1 Klebsiella pneumoniae strain L39_2 plasmid p5_L39, complete sequence (11970 bp)
Overview 1 RT 1: 261-4039 bp Neighborhood of RT #1 [261, 4053] RVT-GII Cloacin E2R135 Cytotoxic Cloacin_immun Feature: gene Location: 261-512 bp Feature: gene Location: 512-1996 bp Ori: QDF94618.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 4-1 604 bp Feature: gene Location: 2101-3786 bp Ori: QDF94604.1 Feature: domain Description: Cloacin Location: 2236-3058 bp Feature: domain Description: Cloacin Location: 2236-3058 bp Feature: domain Description: E2R135 Location: 3067-3472 bp Feature: domain Description: E2R1 35 Location: 3067-3472 bp Feature: domain Description: Cytotoxic Location: 3526-3775 bp Feature: domain Description: Cytotoxic Location: 3526-3775 bp Feature: gene Location: 3796-4053 bp Ori: QDF94605.1 Feature: domain Description: Cloacin_immun Location: 3802-4039 bp Feature: domain Description: Cloacin_immun Location: 3802-4039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), Cloacin_immun (pfam03513)

Seq: CP033957.1 Klebsiella pneumoniae strain L39_2 plasmid p4_L39, complete sequence (87095 bp)
Overview 1 RT 1: 75712-79496 bp Neighborhood of RT #1 [75712, 79510] DUF2913 RVT-GII PRK10276 umuC Feature: gene Location: 75712-76326 bp Ori: QDF94585.1 Feature: domain Description: DUF2913 Location: 75742-76228 bp Feature: domain Description: DUF2 913 Location: 75742 -762 2 8 bp Feature: gene Location: 76493-76744 bp Feature: gene Location: 76744-78228 bp Ori: QDF94600.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77146-77836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77146-77836 bp Feature: gene Location: 78306-78731 bp Ori: QDF94587.1 Feature: domain Description: PRK10276 Location: 78357-78717 bp Feature: domain Description: PRK102 76 Location: 78357-78717 bp Feature: gene Location: 78731-79510 bp Ori: QDF94588.1 Feature: domain Description: umuC Location: 78734-79496 bp Feature: domain Description: umuC Location: 78734-79496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2913 (pfam11140), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP033954.1 Klebsiella pneumoniae strain L39_2 chromosome, complete genome (5473945 bp)
Overview 1 RT 1: 1216314-1221199 bp 2 RT 2: 1381662-1384437 bp 3 RT 3: 1842029-1846901 bp 4 RT 4: 1862642-1868904 bp 5 RT 5: 3115213-3119351 bp 6 RT 6: 3266504-3270603 bp 7 RT 7: 3339336-3343598 bp 8 RT 8: 3705980-3710818 bp Neighborhood of RT #1 [1216314, 1221204] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1381662, 1384437] RVT-GII Neighborhood of RT #3 [1842029, 1846915] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1862642, 1868904] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3115213, 3119351] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3266504, 3270614] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3339336, 3343636] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3705980, 3710868] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1216314-1218698 bp Ori: QDF90045.1 Feature: domain Description: Phage_GPA Location: 1216878-1217844 bp Feature: domain Description: Phage_GPA Location: 1216878-1217844 bp Feature: gene Location: 1218928-1219179 bp Feature: gene Location: 1219179-1220663 bp Ori: QDF93963.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1219581-1220271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1219581-1220271 bp Feature: gene Location: 1220771-1220959 bp Feature: gene Location: 1220971-1221204 bp Ori: QDF90048.1 Feature: domain Description: DinI Location: 1221016-1221199 bp Feature: domain Description: DinI Location: 1221016-1221199 bp Feature: gene Location: 1381662-1381865 bp Feature: gene Location: 1381858-1382196 bp Feature: gene Location: 1382293-1383777 bp Ori: QDF93970.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382695-1383385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 82695-13 83 3 85 bp Feature: gene Location: 1383777-1384028 bp Feature: gene Location: 1384180-1384437 bp Feature: gene Location: 1842029-1843198 bp Ori: QDF90596.1 Gene: dacD Feature: domain Description: dacD Location: 1842038-1843193 bp Feature: domain Description: dacD Location: 184203 8-1843 193 bp Feature: gene Location: 1843468-1843719 bp Feature: gene Location: 1843719-1845203 bp Ori: QDF93990.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1844121-1844811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1844121-1844811 bp Feature: gene Location: 1845285-1845758 bp Ori: QDF90598.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1845288-1845747 bp Feature: domain Description: PRK10016 Location: 1845288-1845747 bp Feature: gene Location: 1845857-1846915 bp Ori: QDF90599.1 Feature: domain Description: YccC Location: 1845863-1846901 bp Feature: domain Description: YccC Location: 1845863 -1846901 bp Feature: gene Location: 1862642-1863745 bp Ori: QDF90618.1 Feature: domain Description: STKc_PknB_like Location: 1862774-1863215 bp Feature: domain Description: STKc_PknB_like Location: 1862774-1863 215 bp Feature: gene Location: 1863815-1864057 bp Feature: gene Location: 1864304-1865404 bp Ori: QDF90619.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1864487-1865015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1864487-1865015 bp Feature: gene Location: 1865519-1867765 bp Ori: QDF90620.1 Feature: domain Description: AAA_15 Location: 1865522-1866530 bp Feature: domain Description: AAA_15 Location: 1865522-186653 0 bp Feature: gene Location: 1868674-1868904 bp Feature: gene Location: 3115213-3116478 bp Ori: QDF91780.1 Gene: umuC Feature: domain Description: umuC Location: 3115216-3116476 bp Feature: domain Description: umuC Location: 3 115216-3 116476 bp Feature: gene Location: 3116480-3116899 bp Ori: QDF91781.1 Feature: domain Description: PRK10276 Location: 3116483-3116894 bp Feature: domain Description: PRK10276 Location: 3 116483 -3 116894 bp Feature: gene Location: 3116979-3118463 bp Ori: QDF94058.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117381-3118071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1173 81-3 118071 bp Feature: gene Location: 3118463-3118714 bp Feature: gene Location: 3119262-3119351 bp Feature: gene Location: 3266504-3267769 bp Ori: QDF91929.1 Gene: umuC Feature: domain Description: umuC Location: 3266507-3267767 bp Feature: domain Description: umuC Location: 3 266507-3 267767 bp Feature: gene Location: 3267772-3268191 bp Ori: QDF91930.1 Feature: domain Description: PRK10276 Location: 3267775-3268186 bp Feature: domain Description: PRK10276 Location: 3 267775-3 268186 bp Feature: gene Location: 3268270-3269754 bp Ori: QDF94065.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3268672-3269362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 268672-3 2693 62 bp Feature: gene Location: 3269754-3270005 bp Feature: gene Location: 3270372-3270614 bp Ori: QDF91932.1 Feature: domain Description: DinI Location: 3270423-3270603 bp Feature: domain Description: DinI Location: 3 270423 -3 270603 bp Feature: gene Location: 3339336-3339626 bp Feature: gene Location: 3339638-3339871 bp Ori: QDF92003.1 Feature: domain Description: PRK10597 Location: 3339641-3339866 bp Feature: domain Description: PRK10597 Location: 3 3 3 9641-3 3 3 9866 bp Feature: gene Location: 3339950-3341434 bp Ori: QDF94070.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3340352-3341042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 403 52-3 3 41042 bp Feature: gene Location: 3341434-3341685 bp Feature: gene Location: 3342275-3343636 bp Ori: QDF92005.1 Feature: domain Description: PRK05318 Location: 3342299-3343598 bp Feature: domain Description: PRK053 18 Location: 3 3 42299-3 3 43 598 bp Feature: gene Location: 3705980-3706858 bp Ori: QDF94092.1 Feature: domain Description: Phage_CI_repr Location: 3706007-3706190 bp Feature: domain Description: Phage_CI_repr Location: 3 706007-3 706190 bp Feature: domain Description: Phage_CI_repr Location: 3706319-3706511 bp Feature: domain Description: Phage_CI_repr Location: 3 7063 19-3 706511 bp Feature: domain Description: Phage_CI_C Location: 3706538-3706832 bp Feature: domain Description: Phage_CI_C Location: 3 70653 8-3 70683 2 bp Feature: gene Location: 3706870-3707814 bp Feature: gene Location: 3707913-3709397 bp Ori: QDF94093.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3708315-3709005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7083 15-3 709005 bp Feature: gene Location: 3709397-3709648 bp Feature: gene Location: 3709816-3710868 bp Ori: QDF92352.1 Feature: domain Description: int Location: 3709819-3710818 bp Feature: domain Description: int Location: 3 709819-3 710818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP033956.1 Klebsiella pneumoniae strain L39_2 plasmid p3_L39, complete sequence (133772 bp)
Overview 1 RT 1: 23672-27893 bp 2 RT 2: 98952-103034 bp Neighborhood of RT #1 [23672, 27893] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [98952, 103171] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Ori: QDF94370.1 Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Ori: QDF94372.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: domain Description: RVT_N Location: 24 64 4 -24 881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 932-25574 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: gene Location: 27143-27400 bp Feature: gene Location: 27663-27893 bp Feature: gene Location: 98952-99383 bp Ori: QDF94441.1 Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: gene Location: 99542-99793 bp Feature: gene Location: 99793-101277 bp Ori: QDF94498.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: gene Location: 101526-102497 bp Ori: QDF94443.1 Feature: domain Description: StbA Location: 101529-102474 bp Feature: domain Description: StbA Location: 101529-1024 74 bp Feature: gene Location: 102500-103171 bp Ori: QDF94444.1 Feature: domain Description: Plasmid_stab_B Location: 102515-102722 bp Feature: domain Description: Plasmid_stab_B Location: 102515-102722 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)