myRT

myRT report for GCA_006494915.1_ASM649491v1

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Seq: CP033962.1 Klebsiella pneumoniae strain L482 plasmid p3_L382, complete sequence (136159 bp)
Overview 1 RT 1: 35819-39915 bp 2 RT 2: 70058-74140 bp Neighborhood of RT #1 [35819, 40040] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [70058, 74277] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 35819-36049 bp Feature: gene Location: 36312-36569 bp Feature: gene Location: 37449-39116 bp Ori: QDF88607.1 Gene: ltrA Feature: domain Description: RVT_N Location: 37497-37734 bp Feature: domain Description: RVT_N Location: 37497-37734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37785-38427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37785-38427 bp Feature: domain Description: GIIM Note: maturase Location: 38478-38712 bp Feature: domain Description: GIIM Note: maturase Location: 38478-3871 2 bp Feature: domain Description: HNHc Note: nucleases Location: 38922-39081 bp Feature: domain Description: HNHc Note: nucleases Location: 38922-39081 bp Feature: gene Location: 39430-39621 bp Feature: gene Location: 39618-40040 bp Ori: QDF88609.1 Feature: domain Description: DUF1380 Location: 39621-39915 bp Feature: domain Description: DUF1 380 Location: 39621 -3991 5 bp Feature: gene Location: 70058-70489 bp Ori: QDF88639.1 Feature: domain Description: PRK10276 Location: 70109-70472 bp Feature: domain Description: PRK1 0276 Location: 701 09-70472 bp Feature: gene Location: 70648-70899 bp Feature: gene Location: 70899-72383 bp Ori: QDF88641.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71301-71991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 301 -71 991 bp Feature: gene Location: 72632-73603 bp Ori: QDF88642.1 Feature: domain Description: StbA Location: 72635-73580 bp Feature: domain Description: StbA Location: 72635-73580 bp Feature: gene Location: 73606-74277 bp Ori: QDF88643.1 Feature: domain Description: Plasmid_stab_B Location: 73621-73828 bp Feature: domain Description: Plasmid_stab_B Location: 73621 -73828 bp Feature: domain Description: Plasmid_stab_B Location: 73933-74140 bp Feature: domain Description: Plasmid_stab_B Location: 73933-741 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP033964.1 Klebsiella pneumoniae strain L482 plasmid p5_L382, complete sequence (11970 bp)
Overview 1 RT 1: 8084-12240 bp Neighborhood of RT #1 [8084, 12251] RVT-GII Cloacin E2R135 Cytotoxic Feature: gene Location: 8084-8329 bp Feature: gene Location: 8726-8977 bp Feature: gene Location: 8977-10461 bp Ori: QDF88880.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9379-10069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9379-10069 bp Feature: gene Location: 10566-12251 bp Ori: QDF88865.1 Feature: domain Description: Cloacin Location: 10701-11523 bp Feature: domain Description: Cloacin Location: 10701-1152 3 bp Feature: domain Description: E2R135 Location: 11532-11937 bp Feature: domain Description: E2 R135 Location: 11532 -11937 bp Feature: domain Description: Cytotoxic Location: 11991-12240 bp Feature: domain Description: Cytotoxic Location: 11991-12 2 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000)

Seq: CP033961.1 Klebsiella pneumoniae strain L482 plasmid p2_L382, complete sequence (145683 bp)
Overview 1 RT 1: 129312-133173 bp Neighborhood of RT #1 [129312, 133173] HHA RVT-GII INT_Cre_C Feature: gene Location: 129312-129566 bp Ori: QDF88535.1 Feature: domain Description: HHA Location: 129363-129546 bp Feature: domain Description: HHA Location: 1293 63 -129546 bp Feature: gene Location: 129833-130084 bp Feature: gene Location: 130084-131568 bp Ori: QDF88537.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130486-131176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 0486-13 1176 bp Feature: gene Location: 131654-132790 bp Ori: QDF88538.1 Feature: domain Description: INT_Cre_C Location: 132077-132731 bp Feature: domain Description: INT_Cre_C Location: 13 2077-13 273 1 bp Feature: gene Location: 132856-133173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP033963.1 Klebsiella pneumoniae strain L482 plasmid p4_L382, complete sequence (102879 bp)
Overview 1 RT 1: 32787-37070 bp Neighborhood of RT #1 [32787, 37072] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 32787-33209 bp Ori: QDF88779.1 Feature: domain Description: DUF1380 Location: 32790-33084 bp Feature: domain Description: DUF1380 Location: 32790-33084 bp Feature: gene Location: 33206-33397 bp Feature: gene Location: 33711-35378 bp Ori: QDF88781.1 Gene: ltrA Feature: domain Description: RVT_N Location: 33759-33996 bp Feature: domain Description: RVT_N Location: 33759-33996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34047-34689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 04 7-34 689 bp Feature: domain Description: GIIM Note: maturase Location: 34740-34974 bp Feature: domain Description: GIIM Note: maturase Location: 34 74 0-34 974 bp Feature: domain Description: HNHc Note: nucleases Location: 35184-35343 bp Feature: domain Description: HNHc Note: nucleases Location: 35184 -3534 3 bp Feature: gene Location: 36092-36598 bp Feature: gene Location: 36545-37072 bp Ori: QDF88782.1 Gene: ssb Feature: domain Description: PRK13732 Location: 36548-37070 bp Feature: domain Description: PRK13732 Location: 3654 8-37070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: CP033960.1 Klebsiella pneumoniae strain L482 chromosome, complete genome (5461882 bp)
Overview 1 RT 1: 470596-474111 bp 2 RT 2: 1280027-1284912 bp 3 RT 3: 1888380-1893252 bp 4 RT 4: 1908993-1915255 bp 5 RT 5: 3054028-3056536 bp 6 RT 6: 3133711-3137849 bp 7 RT 7: 3286103-3292112 bp 8 RT 8: 3360844-3368861 bp 9 RT 9: 3682806-3686832 bp 10 RT 10: 3690517-3697265 bp Neighborhood of RT #1 [470596, 474479] PRK10276 RVT-GII Beta_helix Neighborhood of RT #2 [1280027, 1284917] Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1888380, 1893266] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1908993, 1915255] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3054028, 3056536] RVT-GII Neighborhood of RT #6 [3133711, 3137849] umuC PRK10276 RVT-GII Neighborhood of RT #7 [3286103, 3292123] umuC PRK10276 RVT-GII RVT-GII DinI Neighborhood of RT #8 [3360844, 3369046] PRK10597 RVT-GII PRK05318 RVT-GII HTH_28 rve Neighborhood of RT #9 [3682806, 3687716] DinI RVT-GII Phage_GPA Neighborhood of RT #10 [3690517, 3697315] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII RVT-GII int Feature: gene Location: 470596-470913 bp Ori: QDF88187.1 Feature: domain Description: PRK10276 Location: 470602-470716 bp Feature: domain Description: PRK10276 Location: 470602-470716 bp Feature: gene Location: 470913-471152 bp Feature: gene Location: 471230-472714 bp Ori: QDF83579.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471632-472322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471632-472322 bp Feature: gene Location: 472714-472965 bp Feature: gene Location: 473169-474479 bp Ori: QDF83581.1 Feature: domain Description: Beta_helix Location: 473616-474111 bp Feature: domain Description: Beta_helix Location: 473616-474111 bp Feature: gene Location: 1280027-1282411 bp Ori: QDF84376.1 Feature: domain Description: Phage_GPA Location: 1280591-1281557 bp Feature: domain Description: Phage_GPA Location: 12805 91-12815 5 7 bp Feature: gene Location: 1282641-1282892 bp Feature: gene Location: 1282892-1284376 bp Ori: QDF84378.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1283294-1283984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1283294-1283984 bp Feature: gene Location: 1284484-1284672 bp Feature: gene Location: 1284684-1284917 bp Ori: QDF84380.1 Feature: domain Description: DinI Location: 1284729-1284912 bp Feature: domain Description: DinI Location: 1284729-1284912 bp Feature: gene Location: 1888380-1889549 bp Ori: QDF84917.1 Gene: dacD Feature: domain Description: dacD Location: 1888389-1889544 bp Feature: domain Description: dacD Location: 1888389-18895 44 bp Feature: gene Location: 1889819-1890070 bp Feature: gene Location: 1890070-1891554 bp Ori: QDF84919.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890472-1891162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890472-1891162 bp Feature: gene Location: 1891636-1892109 bp Ori: QDF84920.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1891639-1892098 bp Feature: domain Description: PRK10016 Location: 1891639-1892098 bp Feature: gene Location: 1892208-1893266 bp Ori: QDF84921.1 Feature: domain Description: YccC Location: 1892214-1893252 bp Feature: domain Description: YccC Location: 1892214-189325 2 bp Feature: gene Location: 1908993-1910096 bp Ori: QDF84940.1 Feature: domain Description: STKc_PknB_like Location: 1909125-1909566 bp Feature: domain Description: STKc_PknB_like Location: 1909125 -19095 66 bp Feature: gene Location: 1910166-1910408 bp Feature: gene Location: 1910655-1911755 bp Ori: QDF84941.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1910838-1911366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1910838-1911366 bp Feature: gene Location: 1911870-1914116 bp Ori: QDF84942.1 Feature: domain Description: AAA_15 Location: 1911873-1912881 bp Feature: domain Description: AAA_15 Location: 1911873-1912881 bp Feature: gene Location: 1915025-1915255 bp Feature: gene Location: 3054028-3054312 bp Feature: gene Location: 3054326-3054397 bp Feature: gene Location: 3054390-3055874 bp Ori: QDF85985.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3054792-3055482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305 4792-305 5 482 bp Feature: gene Location: 3055874-3056125 bp Feature: gene Location: 3056327-3056536 bp Feature: gene Location: 3133711-3134976 bp Ori: QDF86076.1 Gene: umuC Feature: domain Description: umuC Location: 3133714-3134974 bp Feature: domain Description: umuC Location: 3133714-3134974 bp Feature: gene Location: 3134978-3135397 bp Ori: QDF86077.1 Feature: domain Description: PRK10276 Location: 3134981-3135392 bp Feature: domain Description: PRK10276 Location: 3134981-3135 392 bp Feature: gene Location: 3135477-3136961 bp Ori: QDF86078.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3135879-3136569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3135 879-31365 69 bp Feature: gene Location: 3136961-3137212 bp Feature: gene Location: 3137760-3137849 bp Feature: gene Location: 3286103-3287368 bp Ori: QDF86228.1 Gene: umuC Feature: domain Description: umuC Location: 3286106-3287366 bp Feature: domain Description: umuC Location: 3286106-3287366 bp Feature: gene Location: 3287371-3287790 bp Ori: QDF86229.1 Feature: domain Description: PRK10276 Location: 3287374-3287785 bp Feature: domain Description: PRK10276 Location: 3287374-3287785 bp Feature: gene Location: 3287869-3289353 bp Ori: QDF86230.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3288271-3288961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3288271-3288961 bp Feature: gene Location: 3289353-3289604 bp Feature: gene Location: 3289779-3291263 bp Ori: QDF86232.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3290181-3290871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3290181-3290871 bp Feature: gene Location: 3291263-3291514 bp Feature: gene Location: 3291881-3292123 bp Ori: QDF86234.1 Feature: domain Description: DinI Location: 3291932-3292112 bp Feature: domain Description: DinI Location: 3291932-3292112 bp Feature: gene Location: 3360844-3361134 bp Feature: gene Location: 3361146-3361379 bp Ori: QDF86304.1 Feature: domain Description: PRK10597 Location: 3361149-3361374 bp Feature: domain Description: PRK105 97 Location: 3361149-3361374 bp Feature: gene Location: 3361458-3362942 bp Ori: QDF86305.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3361860-3362550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3361860-33625 5 0 bp Feature: gene Location: 3362942-3363193 bp Feature: gene Location: 3363783-3365144 bp Ori: QDF86307.1 Feature: domain Description: PRK05318 Location: 3363807-3365106 bp Feature: domain Description: PRK05 318 Location: 3363807-3365 106 bp Feature: gene Location: 3365987-3366076 bp Feature: gene Location: 3366069-3367553 bp Ori: QDF86308.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366471-3367161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3366471-3367161 bp Feature: gene Location: 3367553-3367804 bp Feature: gene Location: 3368000-3369046 bp Ori: QDF86310.1 Feature: domain Description: HTH_28 Location: 3368123-3368243 bp Feature: domain Description: HTH_28 Location: 3368123-3368243 bp Feature: domain Description: rve Location: 3368531-3368861 bp Feature: domain Description: rve Location: 33685 31-3368861 bp Feature: gene Location: 3682806-3683111 bp Ori: QDF86592.1 Feature: domain Description: DinI Location: 3682920-3683106 bp Feature: domain Description: DinI Location: 3682920-3683106 bp Feature: gene Location: 3683050-3683238 bp Feature: gene Location: 3683339-3684823 bp Ori: QDF86593.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3683741-3684431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3683741-3684431 bp Feature: gene Location: 3684823-3685074 bp Feature: gene Location: 3685302-3687716 bp Ori: QDF86595.1 Feature: domain Description: Phage_GPA Location: 3685866-3686832 bp Feature: domain Description: Phage_GPA Location: 3685 866-3686832 bp Feature: gene Location: 3690517-3691395 bp Ori: QDF88345.1 Feature: domain Description: Phage_CI_repr Location: 3690544-3690727 bp Feature: domain Description: Phage_CI_repr Location: 36905 44-3690727 bp Feature: domain Description: Phage_CI_repr Location: 3690856-3691048 bp Feature: domain Description: Phage_CI_repr Location: 369085 6-3691048 bp Feature: domain Description: Phage_CI_C Location: 3691075-3691369 bp Feature: domain Description: Phage_CI_C Location: 3691075 -3691369 bp Feature: gene Location: 3691407-3692351 bp Feature: gene Location: 3692450-3693934 bp Ori: QDF86604.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3692852-3693542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369285 2-36935 42 bp Feature: gene Location: 3693934-3694185 bp Feature: gene Location: 3694360-3695844 bp Ori: QDF86606.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3694762-3695452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3694762-3695 45 2 bp Feature: gene Location: 3695844-3696095 bp Feature: gene Location: 3696263-3697315 bp Ori: QDF86608.1 Feature: domain Description: int Location: 3696266-3697265 bp Feature: domain Description: int Location: 3696266-3697265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Beta_helix (pfam13229), Phage_GPA (pfam05840), DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), umuC (PRK03609), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), HTH_28 (pfam13518), rve (pfam00665), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)