myRT

myRT report for GCA_006542665.1_Acom_1.0

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Seq: AP019735.1 Alistipes sp. 5CBH24 DNA, complete genome (3301347 bp)
Overview 1 RT 1: 87606-93827 bp 2 RT 2: 1163546-1168863 bp 3 RT 3: 1176292-1182662 bp 4 RT 4: 1942125-1946992 bp Neighborhood of RT #1 [87606, 93874] DUF3876 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #2 [1163546, 1169051] RVT-GII GIIM RrnaAD DDE_Tnp_1 Neighborhood of RT #3 [1176292, 1182706] DUF4141 SesA DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #4 [1942125, 1947009] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY RteC Feature: gene Location: 87606-87917 bp Ori: BBL02769.1 Feature: domain Description: DUF3876 Location: 87657-87906 bp Feature: domain Description: DUF3876 Location: 87657-87906 bp Feature: gene Location: 87928-88467 bp Ori: BBL02770.1 Feature: domain Description: DUF3876 Location: 88198-88447 bp Feature: domain Description: DUF3876 Location: 881 98-88447 bp Feature: gene Location: 88714-90537 bp Ori: BBL02771.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88978-89800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88978-89800 bp Feature: domain Description: Intron_maturas2 Location: 89971-90211 bp Feature: domain Description: Intron_maturas2 Location: 89971 -9021 1 bp Feature: domain Description: HNHc Note: nucleases Location: 90328-90499 bp Feature: domain Description: HNHc Note: nucleases Location: 90328-90499 bp Feature: gene Location: 91087-93552 bp Ori: BBL02772.1 Feature: domain Description: Bac_Flav_CT_G Location: 91090-93544 bp Feature: domain Description: Bac_Flav_CT_G Location: 91 090-93544 bp Feature: gene Location: 93545-93874 bp Ori: BBL02773.1 Feature: domain Description: DUF4133 Location: 93560-93827 bp Feature: domain Description: DUF41 33 Location: 93560-93827 bp Feature: gene Location: 1163546-1163791 bp Feature: gene Location: 1163845-1164153 bp Feature: gene Location: 1164733-1166028 bp Ori: BBL03612.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164928-1165543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 64928-1 1 65543 bp Feature: domain Description: GIIM Note: maturase Location: 1165615-1165828 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 6561 5-1 1 65828 bp Feature: gene Location: 1166774-1167574 bp Ori: BBL03613.1 Feature: domain Description: RrnaAD Location: 1166801-1167539 bp Feature: domain Description: RrnaAD Location: 1 1 66801 -1 1 67539 bp Feature: gene Location: 1167765-1169051 bp Ori: BBL03614.1 Feature: domain Description: DDE_Tnp_1 Location: 1168182-1168863 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 681 82-1 1 68863 bp Feature: gene Location: 1176292-1176903 bp Ori: BBL03624.1 Feature: domain Description: DUF4141 Location: 1176295-1176442 bp Feature: domain Description: DUF41 41 Location: 1 1 76295-1 1 76442 bp Feature: domain Description: SesA Location: 1176448-1176778 bp Feature: domain Description: SesA Location: 1 1 76448-1 1 76778 bp Feature: gene Location: 1176945-1177325 bp Ori: BBL03625.1 Feature: domain Description: DUF3876 Location: 1177026-1177290 bp Feature: domain Description: DUF3876 Location: 1 1 77026-1 1 77290 bp Feature: gene Location: 1177586-1179409 bp Ori: BBL03626.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1177850-1178672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 77850-1 1 78672 bp Feature: domain Description: Intron_maturas2 Location: 1178846-1179089 bp Feature: domain Description: Intron_maturas2 Location: 1 1 78846-1 1 79089 bp Feature: domain Description: HNHc Note: nucleases Location: 1179200-1179371 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 79200-1 1 79371 bp Feature: gene Location: 1179978-1182377 bp Ori: BBL03627.1 Feature: domain Description: Bac_Flav_CT_G Location: 1179981-1182369 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 79981 -1 1 82369 bp Feature: gene Location: 1182374-1182706 bp Ori: BBL03628.1 Feature: domain Description: DUF4133 Location: 1182392-1182662 bp Feature: domain Description: DUF41 33 Location: 1 1 82392-1 1 82662 bp Feature: gene Location: 1942125-1942583 bp Ori: BBL04261.1 Feature: domain Description: TraG-D_C Location: 1942293-1942563 bp Feature: domain Description: TraG-D_C Location: 1 942293-1 942563 bp Feature: gene Location: 1942583-1942933 bp Feature: gene Location: 1942926-1944710 bp Ori: BBL04263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1943169-1943991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9431 69-1 943991 bp Feature: domain Description: Intron_maturas2 Location: 1944069-1944399 bp Feature: domain Description: Intron_maturas2 Location: 1 944069-1 944399 bp Feature: domain Description: HNHc Note: nucleases Location: 1944543-1944687 bp Feature: domain Description: HNHc Note: nucleases Location: 1 944543-1 944687 bp Feature: gene Location: 1945276-1946286 bp Ori: BBL04264.1 Feature: domain Description: YWFCY Location: 1945282-1945459 bp Feature: domain Description: YWFCY Location: 1 945282-1 945459 bp Feature: gene Location: 1946398-1947009 bp Ori: BBL04265.1 Feature: domain Description: RteC Location: 1946722-1946992 bp Feature: domain Description: RteC Location: 1 946722-1 946992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571), GIIM (pfam08388), RrnaAD (pfam00398), DDE_Tnp_1 (pfam01609), DUF4141 (pfam13605)
SesA (pfam17107), TraG-D_C (pfam12696), YWFCY (pfam14293), RteC (pfam09357)