myRT

myRT report for GCA_006542725.1_Aond_3.0

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Seq: AP019738.1 Alistipes sp. 5NYCFAH2 DNA, complete genome (3312682 bp)
Overview 1 RT 1: 336617-342129 bp 2 RT 2: 1601001-1604291 bp 3 RT 3: 2316382-2324221 bp 4 RT 4: 2527201-2535659 bp Neighborhood of RT #1 [336617, 342140] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Neighborhood of RT #2 [1601001, 1604311] RVT-GII Relaxase Neighborhood of RT #3 [2316382, 2324250] ZIP_Gal4-like_1 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #4 [2527201, 2535703] DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 336617-336940 bp Ori: BBL10867.1 Feature: domain Description: DUF4133 Location: 336632-336899 bp Feature: domain Description: DUF41 33 Location: 336632-336899 bp Feature: gene Location: 336937-337875 bp Ori: BBL10868.1 Feature: domain Description: Bac_Flav_CT_G Location: 336940-337861 bp Feature: domain Description: Bac_Flav_CT_G Location: 336940-337861 bp Feature: gene Location: 338459-340120 bp Ori: BBL10869.1 Feature: domain Description: RVT_N Location: 338513-338756 bp Feature: domain Description: RVT_N Location: 33851 3-338756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338801-339449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338801 -339449 bp Feature: domain Description: GIIM Note: maturase Location: 339503-339734 bp Feature: domain Description: GIIM Note: maturase Location: 339503-339734 bp Feature: gene Location: 340117-341811 bp Ori: BBL10870.1 Feature: domain Description: Bac_Flav_CT_G Location: 340237-341803 bp Feature: domain Description: Bac_Flav_CT_G Location: 340237-341 803 bp Feature: gene Location: 341826-342140 bp Ori: BBL10871.1 Feature: domain Description: DUF3876 Location: 341880-342129 bp Feature: domain Description: DUF3876 Location: 341 880-3421 29 bp Feature: gene Location: 1601001-1601288 bp Feature: gene Location: 1601713-1601877 bp Feature: gene Location: 1601933-1603153 bp Ori: BBL11941.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1602098-1602920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 602098-1 602920 bp Feature: gene Location: 1603629-1603910 bp Feature: gene Location: 1603937-1604311 bp Ori: BBL11943.1 Feature: domain Description: Relaxase Location: 1603991-1604291 bp Feature: domain Description: Relaxase Location: 1 603991 -1 604291 bp Feature: gene Location: 2316382-2316516 bp Ori: BBL12518.1 Feature: domain Description: ZIP_Gal4-like_1 Location: 2316439-2316493 bp Feature: domain Description: ZIP_Gal4-like_1 Location: 231 6439-231 6493 bp Feature: gene Location: 2316534-2316935 bp Ori: BBL12519.1 Feature: domain Description: Bac_Flav_CT_G Location: 2316540-2316918 bp Feature: domain Description: Bac_Flav_CT_G Location: 231 6540-231 691 8 bp Feature: gene Location: 2317083-2318909 bp Ori: BBL12520.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2317368-2318190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 7368-231 81 90 bp Feature: domain Description: Intron_maturas2 Location: 2318262-2318589 bp Feature: domain Description: Intron_maturas2 Location: 231 8262-231 8589 bp Feature: domain Description: HNHc Note: nucleases Location: 2318739-2318886 bp Feature: domain Description: HNHc Note: nucleases Location: 231 8739-231 8886 bp Feature: gene Location: 2319435-2320796 bp Ori: BBL12521.1 Feature: domain Description: Bac_Flav_CT_G Location: 2319519-2320785 bp Feature: domain Description: Bac_Flav_CT_G Location: 231 951 9-2320785 bp Feature: gene Location: 2320810-2322492 bp Ori: BBL12522.1 Feature: domain Description: RVT_N Location: 2320873-2321116 bp Feature: domain Description: RVT_N Location: 2320873-2321 1 1 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321161-2321809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321 1 61 -2321 809 bp Feature: domain Description: GIIM Note: maturase Location: 2321860-2322094 bp Feature: domain Description: GIIM Note: maturase Location: 2321 860-2322094 bp Feature: gene Location: 2323098-2323835 bp Ori: BBL12523.1 Feature: domain Description: Bac_Flav_CT_G Location: 2323101-2323818 bp Feature: domain Description: Bac_Flav_CT_G Location: 23231 01 -232381 8 bp Feature: gene Location: 2323936-2324250 bp Ori: BBL12524.1 Feature: domain Description: DUF4133 Location: 2323954-2324221 bp Feature: domain Description: DUF41 33 Location: 2323954-2324221 bp Feature: gene Location: 2527201-2527632 bp Feature: gene Location: 2527625-2527981 bp Ori: BBL12704.1 Feature: domain Description: DUF3876 Location: 2527706-2527955 bp Feature: domain Description: DUF3876 Location: 2527706-2527955 bp Feature: gene Location: 2528219-2529943 bp Ori: BBL12705.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528384-2529206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528384-2529206 bp Feature: domain Description: Intron_maturas2 Location: 2529383-2529584 bp Feature: domain Description: Intron_maturas2 Location: 2529383-2529584 bp Feature: domain Description: HNHc Note: nucleases Location: 2529734-2529905 bp Feature: domain Description: HNHc Note: nucleases Location: 2529734-2529905 bp Feature: gene Location: 2530591-2532183 bp Ori: BBL12706.1 Feature: domain Description: Bac_Flav_CT_G Location: 2530711-2532175 bp Feature: domain Description: Bac_Flav_CT_G Location: 253071 1 -25321 75 bp Feature: gene Location: 2532180-2533841 bp Ori: BBL12707.1 Feature: domain Description: RVT_N Location: 2532234-2532477 bp Feature: domain Description: RVT_N Location: 2532234-2532477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2532522-2533170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2532522-25331 70 bp Feature: domain Description: GIIM Note: maturase Location: 2533224-2533455 bp Feature: domain Description: GIIM Note: maturase Location: 2533224-2533455 bp Feature: gene Location: 2534425-2535369 bp Ori: BBL12708.1 Feature: domain Description: Bac_Flav_CT_G Location: 2534428-2535355 bp Feature: domain Description: Bac_Flav_CT_G Location: 2534428-2535355 bp Feature: gene Location: 2535374-2535703 bp Ori: BBL12709.1 Feature: domain Description: DUF4133 Location: 2535392-2535659 bp Feature: domain Description: DUF41 33 Location: 2535392-2535659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992), Relaxase (pfam03432), ZIP_Gal4-like_1 (cd14724), Intron_maturas2 (pfam01348), HNHc (smart00507)