myRT

myRT report for GCA_006546965.1_ASM654696v1

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Seq: CP041230.1 Bacteroides xylanisolvens strain H207 chromosome, complete genome (6499434 bp)
Overview 1 RT 1: 670576-674629 bp 2 RT 2: 2874903-2887334 bp 3 RT 3: 3833319-3839960 bp 4 RT 4: 4513733-4518428 bp 5 RT 5: 4558095-4568322 bp 6 RT 6: 4651570-4662953 bp 7 RT 7: 5572920-5577183 bp 8 RT 8: 5645256-5650232 bp 9 RT 9: 6072835-6077634 bp Neighborhood of RT #1 [670576, 674655] Esterase RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [2874903, 2887465] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #3 [3833319, 3840016] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Neighborhood of RT #4 [4513733, 4518428] RVT-UG27 HTH_Hin_like Neighborhood of RT #5 [4558095, 4568322] DUF1566 Avd_like DUF1566 RVT-DGRs Neighborhood of RT #6 [4651570, 4662953] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Neighborhood of RT #7 [5572920, 5577194] GDPD_like_2 RVT_N RVT-GII RVT-GII HTH_28 Mfa_like_1 DUF1566 Neighborhood of RT #8 [5645256, 5650246] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Neighborhood of RT #9 [6072835, 6077780] IS285 RVT-GII KOG1378 Feature: gene Location: 670576-671505 bp Feature: domain Description: Esterase Location: 670672-671437 bp Feature: domain Description: Esterase Location: 670672-671 437 bp Feature: gene Location: 671640-671915 bp Feature: gene Location: 671881-673302 bp Ori: QDH53261.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 672253-672958 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 672253-672958 bp Feature: gene Location: 673317-673697 bp Ori: QDH53262.1 Feature: domain Description: Avd_like Location: 673344-673650 bp Feature: domain Description: Avd_like Location: 673344-673650 bp Feature: gene Location: 673843-674655 bp Ori: QDH53263.1 Feature: domain Description: DUF1566 Location: 674377-674629 bp Feature: domain Description: DUF1 566 Location: 674377-674629 bp Feature: gene Location: 2874903-2875763 bp Ori: QDH54670.1 Feature: domain Description: PDDEXK_2 Location: 2874924-2875602 bp Feature: domain Description: PDDEXK_2 Location: 2874924-2875602 bp Feature: gene Location: 2875977-2878139 bp Feature: gene Location: 2878347-2879477 bp Ori: QDH54671.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2878668-2879211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2878668-287921 1 bp Feature: gene Location: 2879528-2885569 bp Ori: QDH54672.1 Feature: domain Description: DUF4011 Location: 2880758-2881271 bp Feature: domain Description: DUF401 1 Location: 2880758-2881 271 bp Feature: domain Description: DEXXQc_SF1 Location: 2881610-2882039 bp Feature: domain Description: DEXXQc_SF1 Location: 2881 61 0-2882039 bp Feature: domain Description: DEXXQc_SF1 Location: 2883038-2883797 bp Feature: domain Description: DEXXQc_SF1 Location: 2883038-2883797 bp Feature: domain Description: TIGR00376 Location: 2883926-2884316 bp Feature: domain Description: TIGR00376 Location: 2883926-288431 6 bp Feature: domain Description: MTES_1575 Location: 2884469-2884754 bp Feature: domain Description: MTES_1 575 Location: 2884469-2884754 bp Feature: domain Description: DUF3320 Location: 2885084-2885219 bp Feature: domain Description: DUF3320 Location: 2885084-288521 9 bp Feature: gene Location: 2885666-2887465 bp Ori: QDH54673.1 Feature: domain Description: rpsA Location: 2885735-2887334 bp Feature: domain Description: rpsA Location: 2885735-2887334 bp Feature: gene Location: 3833319-3835022 bp Ori: QDH55373.1 Feature: domain Description: REC Location: 3834138-3834369 bp Feature: domain Description: REC Location: 38341 38-3834369 bp Feature: gene Location: 3835019-3835663 bp Feature: gene Location: 3835641-3837860 bp Ori: QDH55375.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3835842-3836427 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3835842-3836427 bp Feature: gene Location: 3838131-3839102 bp Ori: QDH55376.1 Feature: domain Description: Phage_int_SAM_5 Location: 3838170-3838413 bp Feature: domain Description: Phage_int_SAM_5 Location: 38381 70-383841 3 bp Feature: domain Description: INTN1_C_like Location: 3838497-3839016 bp Feature: domain Description: INTN1 _C_like Location: 3838497-383901 6 bp Feature: gene Location: 3839438-3840016 bp Ori: QDH55377.1 Feature: domain Description: NGN_SP_UpxY Location: 3839516-3839798 bp Feature: domain Description: NGN_SP_UpxY Location: 383951 6-3839798 bp Feature: domain Description: KOW_NusG Location: 3839849-3839960 bp Feature: domain Description: KOW_NusG Location: 3839849-3839960 bp Feature: gene Location: 4513733-4514722 bp Feature: gene Location: 4514757-4515215 bp Feature: gene Location: 4516239-4517507 bp Ori: QDH55886.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 4516428-4517064 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 451 6428-451 7064 bp Feature: gene Location: 4517504-4517827 bp Ori: QDH55887.1 Feature: domain Description: HTH_Hin_like Location: 4517555-4517657 bp Feature: domain Description: HTH_Hin_like Location: 451 7555-451 7657 bp Feature: gene Location: 4517817-4518428 bp Feature: gene Location: 4558095-4564121 bp Ori: QDH55934.1 Feature: domain Description: DUF1566 Location: 4563810-4564110 bp Feature: domain Description: DUF1 566 Location: 456381 0-45641 1 0 bp Feature: gene Location: 4564251-4564652 bp Ori: QDH55935.1 Feature: domain Description: Avd_like Location: 4564290-4564629 bp Feature: domain Description: Avd_like Location: 4564290-4564629 bp Feature: gene Location: 4564665-4566086 bp Ori: QDH55936.1 Feature: domain Description: DUF1566 Location: 4564737-4564881 bp Feature: domain Description: DUF1 566 Location: 4564737-4564881 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4565070-4565811 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4565070-456581 1 bp Feature: gene Location: 4566077-4566430 bp Feature: gene Location: 4566493-4568322 bp Feature: gene Location: 4651570-4652715 bp Ori: QDH56018.1 Feature: domain Description: Arm-DNA-bind_5 Location: 4651594-4651840 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4651 594-4651 840 bp Feature: domain Description: Phage_int_SAM_5 Location: 4651879-4652164 bp Feature: domain Description: Phage_int_SAM_5 Location: 4651 879-46521 64 bp Feature: domain Description: INTN1_C_like Location: 4652203-4652677 bp Feature: domain Description: INTN1 _C_like Location: 4652203-4652677 bp Feature: gene Location: 4652765-4653259 bp Feature: gene Location: 4653261-4654556 bp Ori: QDH56020.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4653477-4654068 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4653477-4654068 bp Feature: gene Location: 4654989-4661777 bp Ori: QDH56021.1 Feature: domain Description: Laminin_G_3 Location: 4657428-4657806 bp Feature: domain Description: Laminin_G_3 Location: 4657428-4657806 bp Feature: domain Description: CotH Location: 4658634-4659114 bp Feature: domain Description: CotH Location: 4658634-46591 1 4 bp Feature: domain Description: LRR_AMN1 Location: 4659534-4659981 bp Feature: domain Description: LRR_AMN1 Location: 4659534-4659981 bp Feature: gene Location: 4661787-4662953 bp Feature: gene Location: 5572920-5573669 bp Ori: QDH57696.1 Feature: domain Description: GDPD_like_2 Location: 5572977-5573634 bp Feature: domain Description: GDPD_like_2 Location: 5572977-5573634 bp Feature: gene Location: 5574364-5574600 bp Feature: gene Location: 5574614-5574991 bp Ori: QDH56795.1 Feature: domain Description: RVT_N Location: 5574617-5574842 bp Feature: domain Description: RVT_N Location: 557461 7-5574842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5574896-5574965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5574896-5574965 bp Feature: gene Location: 5574969-5575166 bp Ori: QDH56796.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5574972-5575164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5574972-55751 64 bp Feature: gene Location: 5575287-5575577 bp Ori: QDH56797.1 Feature: domain Description: HTH_28 Location: 5575311-5575455 bp Feature: domain Description: HTH_28 Location: 557531 1 -5575455 bp Feature: gene Location: 5575914-5577194 bp Ori: QDH56798.1 Feature: domain Description: Mfa_like_1 Location: 5575986-5576397 bp Feature: domain Description: Mfa_like_1 Location: 5575986-5576397 bp Feature: domain Description: DUF1566 Location: 5576883-5577183 bp Feature: domain Description: DUF1 566 Location: 5576883-55771 83 bp Feature: gene Location: 5645256-5645426 bp Ori: QDH56851.1 Feature: domain Description: DUF3875 Location: 5645265-5645421 bp Feature: domain Description: DUF3875 Location: 5645265-5645421 bp Feature: gene Location: 5645445-5647277 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 5645448-5647278 bp Feature: domain Description: Bac_Flav_CT_G Location: 5645448-5647278 bp Feature: gene Location: 5647899-5649710 bp Ori: QDH56852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5648163-5648985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56481 63-5648985 bp Feature: domain Description: Intron_maturas2 Location: 5649060-5649375 bp Feature: domain Description: Intron_maturas2 Location: 5649060-5649375 bp Feature: domain Description: HNHc Note: nucleases Location: 5649531-5649681 bp Feature: domain Description: HNHc Note: nucleases Location: 5649531 -5649681 bp Feature: gene Location: 5649788-5650066 bp Ori: QDH56853.1 Feature: domain Description: Bac_Flav_CT_G Location: 5649806-5650064 bp Feature: domain Description: Bac_Flav_CT_G Location: 5649806-5650064 bp Feature: gene Location: 5650073-5650246 bp Ori: QDH56854.1 Feature: domain Description: Bac_Flav_CT_G Location: 5650076-5650232 bp Feature: domain Description: Bac_Flav_CT_G Location: 5650076-5650232 bp Feature: gene Location: 6072835-6073008 bp Feature: gene Location: 6073055-6074260 bp Feature: domain Description: IS285 Location: 6073094-6074252 bp Feature: domain Description: IS285 Location: 6073094-6074252 bp Feature: gene Location: 6074372-6075726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6074708-6074864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6074708-6074864 bp Feature: gene Location: 6076016-6076261 bp Feature: gene Location: 6076611-6077780 bp Ori: QDH57722.1 Feature: domain Description: KOG1378 Location: 6076722-6077634 bp Feature: domain Description: KOG1 378 Location: 6076722-6077634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Esterase (pfam00756), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741)
DUF3320 (pfam11784), rpsA (TIGR00717), REC (smart00448), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), RVT-UG27, HTH_Hin_like (cd00569), Arm-DNA-bind_5 (pfam17293)
Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), GDPD_like_2 (cd08582), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518), Mfa_like_1 (pfam13149), DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783)
Intron_maturas2 (pfam01348), HNHc (smart00507), IS285 (COG3328), KOG1378 (KOG1378, Purple acid phosphatase )