myRT

myRT report for GCA_006740705.1_ASM674070v1

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Seq: CP035485.1 Salilacibacter sp. NKC3-5 chromosome, complete genome (3754174 bp)
Overview 1 RT 1: 65336-71589 bp 2 RT 2: 89222-94728 bp 3 RT 3: 302231-309795 bp 4 RT 4: 808327-813051 bp 5 RT 5: 1238097-1246364 bp 6 RT 6: 1354311-1359560 bp 7 RT 7: 1558116-1565478 bp 8 RT 8: 1763466-1770178 bp 9 RT 9: 1964167-1971482 bp 10 RT 10: 3004377-3008452 bp 11 RT 11: 3405248-3411205 bp 12 RT 12: 3686150-3692441 bp Neighborhood of RT #1 [65336, 71589] INT_C_like_3 USP_OKCHK RVT-GII GIIM DUF1189 Neighborhood of RT #2 [89222, 94736] ThiE RVT-GII GIIM PulE PulF Neighborhood of RT #3 [302231, 309795] SucA PRK05704 RVT-GII GIIM Neighborhood of RT #4 [808327, 813051] NHT_00031 NHT_00031 Trypsin_2 RVT-Retrons PRK06759 Neighborhood of RT #5 [1238097, 1246387] McrBC PRK11331 RVT-GII GIIM DUF820 Neighborhood of RT #6 [1354311, 1359560] PRK03147 PRK00927 RVT-GII GIIM DUF3603 Neighborhood of RT #7 [1558116, 1565480] ilvH PRK07710 RVT-GII GIIM PRK08320 PRK09414 Neighborhood of RT #8 [1763466, 1770183] FtsW RVT-GII GIIM MATE_SpoVB_like Tas Neighborhood of RT #9 [1964167, 1971661] ComEC YycO RVT-GII HNHc PRK09284 PRK12335 Neighborhood of RT #10 [3004377, 3008454] Zn_Tnp_IS91 Y2_Tnp RVT-GII PRK03103 Neighborhood of RT #11 [3405248, 3411231] PRK06526 HTH_23 COG3415 COG4584 RVT-GII BH0617 YpbQ Neighborhood of RT #12 [3686150, 3692449] CoAse RVT-GII GIIM DAP2 AmiC PG_binding_1 PG_binding_1 Feature: gene Location: 65336-65893 bp Ori: QDI89813.1 Feature: domain Description: INT_C_like_3 Location: 65345-65864 bp Feature: domain Description: INT_C_like_3 Location: 65345-65864 bp Feature: gene Location: 66234-66908 bp Ori: QDI89814.1 Feature: domain Description: USP_OKCHK Location: 66267-66642 bp Feature: domain Description: USP_OKCHK Location: 66267-66642 bp Feature: gene Location: 67526-68854 bp Ori: QDI89815.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67781-68474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67781 -68474 bp Feature: domain Description: GIIM Note: maturase Location: 68561-68762 bp Feature: domain Description: GIIM Note: maturase Location: 68561 -68762 bp Feature: gene Location: 69013-69792 bp Ori: QDI89816.1 Feature: domain Description: DUF1189 Location: 69025-69736 bp Feature: domain Description: DUF1 1 89 Location: 69025-69736 bp Feature: gene Location: 69968-71589 bp Feature: gene Location: 89222-89860 bp Ori: QDI89829.1 Gene: thiE Feature: domain Description: ThiE Location: 89234-89846 bp Feature: domain Description: ThiE Location: 89234-89846 bp Feature: gene Location: 89853-90431 bp Feature: gene Location: 91020-92348 bp Ori: QDI89831.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91275-91968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 275-91 968 bp Feature: domain Description: GIIM Note: maturase Location: 92055-92256 bp Feature: domain Description: GIIM Note: maturase Location: 92055-92256 bp Feature: gene Location: 92696-93700 bp Ori: QDI89832.1 Feature: domain Description: PulE Location: 92726-93521 bp Feature: domain Description: PulE Location: 92726-93521 bp Feature: gene Location: 93435-94736 bp Ori: QDI89833.1 Feature: domain Description: PulF Location: 93705-94728 bp Feature: domain Description: PulF Location: 93705-94728 bp Feature: gene Location: 302231-305061 bp Feature: domain Description: SucA Location: 302255-303827 bp Feature: domain Description: SucA Location: 302255-303827 bp Feature: gene Location: 305063-306367 bp Ori: QDI90026.1 Gene: odhB Feature: domain Description: PRK05704 Location: 305066-306362 bp Feature: domain Description: PRK05704 Location: 305066-306362 bp Feature: gene Location: 306970-308298 bp Ori: QDI90027.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307225-307918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307225-30791 8 bp Feature: domain Description: GIIM Note: maturase Location: 308005-308206 bp Feature: domain Description: GIIM Note: maturase Location: 308005-308206 bp Feature: gene Location: 308689-309105 bp Feature: gene Location: 309307-309795 bp Feature: gene Location: 808327-808912 bp Feature: domain Description: NHT_00031 Location: 808348-808426 bp Feature: domain Description: NHT_00031 Location: 808348-808426 bp Feature: domain Description: NHT_00031 Location: 808429-808801 bp Feature: domain Description: NHT_00031 Location: 808429-808801 bp Feature: gene Location: 809229-809855 bp Ori: QDI90438.1 Feature: domain Description: Trypsin_2 Location: 809322-809757 bp Feature: domain Description: Trypsin_2 Location: 809322-809757 bp Feature: gene Location: 809927-810997 bp Ori: QDI90439.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 810152-810731 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81 01 52-81 0731 bp Feature: gene Location: 811642-811890 bp Ori: QDI90440.1 Feature: domain Description: PRK06759 Location: 811648-811831 bp Feature: domain Description: PRK06759 Location: 81 1 648-81 1 831 bp Feature: gene Location: 812578-813051 bp Feature: gene Location: 1238097-1239269 bp Ori: QDI90787.1 Feature: domain Description: McrBC Location: 1238241-1239141 bp Feature: domain Description: McrBC Location: 1 238241 -1 2391 41 bp Feature: gene Location: 1239274-1240140 bp Ori: QDI93024.1 Feature: domain Description: PRK11331 Location: 1239322-1240105 bp Feature: domain Description: PRK1 1 331 Location: 1 239322-1 2401 05 bp Feature: gene Location: 1241905-1243071 bp Ori: QDI90788.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1242127-1242748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2421 27-1 242748 bp Feature: domain Description: GIIM Note: maturase Location: 1242787-1243015 bp Feature: domain Description: GIIM Note: maturase Location: 1 242787-1 24301 5 bp Feature: gene Location: 1244312-1245106 bp Feature: gene Location: 1245815-1246387 bp Ori: QDI93025.1 Feature: domain Description: DUF820 Location: 1245884-1246364 bp Feature: domain Description: DUF820 Location: 1 245884-1 246364 bp Feature: gene Location: 1354311-1354811 bp Ori: QDI90887.1 Feature: domain Description: PRK03147 Location: 1354329-1354800 bp Feature: domain Description: PRK031 47 Location: 1 354329-1 354800 bp Feature: gene Location: 1355100-1356077 bp Ori: QDI90888.1 Gene: trpS Feature: domain Description: PRK00927 Location: 1355103-1356072 bp Feature: domain Description: PRK00927 Location: 1 3551 03-1 356072 bp Feature: gene Location: 1356334-1357662 bp Ori: QDI90889.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356589-1357282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 356589-1 357282 bp Feature: domain Description: GIIM Note: maturase Location: 1357369-1357570 bp Feature: domain Description: GIIM Note: maturase Location: 1 357369-1 357570 bp Feature: gene Location: 1358468-1359217 bp Ori: QDI90890.1 Feature: domain Description: DUF3603 Location: 1358573-1359206 bp Feature: domain Description: DUF3603 Location: 1 358573-1 359206 bp Feature: gene Location: 1359276-1359560 bp Feature: gene Location: 1558116-1558634 bp Ori: QDI91058.1 Gene: ilvN Feature: domain Description: ilvH Location: 1558122-1558599 bp Feature: domain Description: ilvH Location: 1 5581 22-1 558599 bp Feature: gene Location: 1558631-1560400 bp Ori: QDI91059.1 Gene: ilvB Feature: domain Description: PRK07710 Location: 1558697-1560395 bp Feature: domain Description: PRK0771 0 Location: 1 558697-1 560395 bp Feature: gene Location: 1560588-1561916 bp Ori: QDI91060.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1560843-1561536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 560843-1 561 536 bp Feature: domain Description: GIIM Note: maturase Location: 1561623-1561824 bp Feature: domain Description: GIIM Note: maturase Location: 1 561 623-1 561 824 bp Feature: gene Location: 1562835-1563740 bp Ori: QDI91061.1 Gene: ilvE Feature: domain Description: PRK08320 Location: 1562847-1563702 bp Feature: domain Description: PRK08320 Location: 1 562847-1 563702 bp Feature: gene Location: 1564101-1565480 bp Ori: QDI91062.1 Feature: domain Description: PRK09414 Location: 1564143-1565478 bp Feature: domain Description: PRK0941 4 Location: 1 5641 43-1 565478 bp Feature: gene Location: 1763466-1764134 bp Feature: gene Location: 1764179-1765360 bp Ori: QDI91228.1 Gene: ftsW Feature: domain Description: FtsW Location: 1764191-1765283 bp Feature: domain Description: FtsW Location: 1 7641 91 -1 765283 bp Feature: gene Location: 1765536-1766864 bp Ori: QDI91229.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1765791-1766484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 765791 -1 766484 bp Feature: domain Description: GIIM Note: maturase Location: 1766571-1766772 bp Feature: domain Description: GIIM Note: maturase Location: 1 766571 -1 766772 bp Feature: gene Location: 1767434-1769056 bp Ori: QDI91230.1 Feature: domain Description: MATE_SpoVB_like Location: 1767467-1768799 bp Feature: domain Description: MATE_SpoVB_like Location: 1 767467-1 768799 bp Feature: gene Location: 1769239-1770183 bp Ori: QDI91231.1 Feature: domain Description: Tas Location: 1769245-1770178 bp Feature: domain Description: Tas Location: 1 769245-1 7701 78 bp Feature: gene Location: 1964167-1964505 bp Ori: QDI91390.1 Feature: domain Description: ComEC Location: 1964170-1964500 bp Feature: domain Description: ComEC Location: 1 9641 70-1 964500 bp Feature: gene Location: 1965258-1965875 bp Ori: QDI91391.1 Feature: domain Description: YycO Location: 1965375-1965810 bp Feature: domain Description: YycO Location: 1 965375-1 96581 0 bp Feature: gene Location: 1966171-1967973 bp Ori: QDI91392.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1966462-1967161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 966462-1 9671 61 bp Feature: domain Description: HNHc Note: nucleases Location: 1967716-1967854 bp Feature: domain Description: HNHc Note: nucleases Location: 1 96771 6-1 967854 bp Feature: gene Location: 1968934-1970706 bp Ori: QDI91393.1 Gene: thiC Feature: domain Description: PRK09284 Location: 1968958-1970704 bp Feature: domain Description: PRK09284 Location: 1 968958-1 970704 bp Feature: gene Location: 1971137-1971661 bp Ori: QDI91394.1 Feature: domain Description: PRK12335 Location: 1971182-1971482 bp Feature: domain Description: PRK1 2335 Location: 1 971 1 82-1 971 482 bp Feature: gene Location: 3004377-3005678 bp Ori: QDI92264.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3004419-3004686 bp Feature: domain Description: Zn_Tnp_IS91 Location: 300441 9-3004686 bp Feature: domain Description: Y2_Tnp Location: 3004803-3005316 bp Feature: domain Description: Y2_Tnp Location: 3004803-300531 6 bp Feature: gene Location: 3005572-3005843 bp Feature: gene Location: 3006060-3006685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3006093-3006306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3006093-3006306 bp Feature: gene Location: 3006821-3007119 bp Feature: gene Location: 3007207-3008454 bp Ori: QDI92265.1 Feature: domain Description: PRK03103 Location: 3007225-3008452 bp Feature: domain Description: PRK031 03 Location: 3007225-3008452 bp Feature: gene Location: 3405248-3406042 bp Ori: QDI92610.1 Feature: domain Description: PRK06526 Location: 3405287-3405995 bp Feature: domain Description: PRK06526 Location: 3405287-3405995 bp Feature: gene Location: 3406039-3407622 bp Ori: QDI92611.1 Feature: domain Description: HTH_23 Location: 3406048-3406171 bp Feature: domain Description: HTH_23 Location: 3406048-34061 71 bp Feature: domain Description: COG3415 Location: 3406255-3406453 bp Feature: domain Description: COG341 5 Location: 3406255-3406453 bp Feature: domain Description: COG4584 Location: 3406486-3406909 bp Feature: domain Description: COG4584 Location: 3406486-3406909 bp Feature: gene Location: 3407994-3409252 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3408189-3408567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34081 89-3408567 bp Feature: gene Location: 3409636-3410696 bp Feature: domain Description: BH0617 Location: 3409639-3410482 bp Feature: domain Description: BH061 7 Location: 3409639-341 0482 bp Feature: gene Location: 3410701-3411231 bp Ori: QDI92612.1 Feature: domain Description: YpbQ Location: 3410707-3411205 bp Feature: domain Description: YpbQ Location: 341 0707-341 1 205 bp Feature: gene Location: 3686150-3686800 bp Ori: QDI92857.1 Feature: domain Description: CoAse Location: 3686264-3686777 bp Feature: domain Description: CoAse Location: 3686264-3686777 bp Feature: gene Location: 3686876-3687064 bp Feature: gene Location: 3687662-3688990 bp Ori: QDI92859.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3687917-3688610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368791 7-368861 0 bp Feature: domain Description: GIIM Note: maturase Location: 3688697-3688898 bp Feature: domain Description: GIIM Note: maturase Location: 3688697-3688898 bp Feature: gene Location: 3689123-3691114 bp Ori: QDI92860.1 Feature: domain Description: DAP2 Location: 3689138-3691106 bp Feature: domain Description: DAP2 Location: 36891 38-3691 1 06 bp Feature: gene Location: 3691295-3692449 bp Ori: QDI92861.1 Feature: domain Description: AmiC Location: 3691370-3691910 bp Feature: domain Description: AmiC Location: 3691 370-3691 91 0 bp Feature: domain Description: PG_binding_1 Location: 3692030-3692201 bp Feature: domain Description: PG_binding_1 Location: 3692030-3692201 bp Feature: domain Description: PG_binding_1 Location: 3692270-3692441 bp Feature: domain Description: PG_binding_1 Location: 3692270-3692441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_3 (cd01192), USP_OKCHK (cd01987), RVT-GII, GIIM (pfam08388), DUF1189 (pfam06691), ThiE (COG0352), PulE (COG2804), PulF (COG1459), SucA (COG0567), PRK05704 (2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase)
NHT_00031 (TIGR04181), Trypsin_2 (pfam13365), RVT-Retrons, PRK06759 (RNA polymerase factor sigma-70; Validated), McrBC (pfam10117), PRK11331 (5-methylcytosine-specific restriction enzyme subunit McrB; Provisional), DUF820, PRK03147 (thiol-disulfide oxidoreductase ResA), PRK00927 (tryptophanyl-tRNA synthetase; Reviewed), DUF3603 (pfam12227)
ilvH (PRK11895), PRK07710 (acetolactate synthase large subunit), PRK08320 (branched-chain amino acid aminotransferase; Reviewed), PRK09414 (NADP-specific glutamate dehydrogenase), FtsW (COG0772), MATE_SpoVB_like (cd13124), Tas (COG0667), ComEC (COG2333), YycO (COG3863), HNHc (smart00507)
PRK09284 (thiamine biosynthesis protein ThiC; Provisional), PRK12335 (tellurite resistance protein TehB; Provisional), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PRK03103 (DNA polymerase IV; Reviewed), PRK06526 (transposase; Provisional), HTH_23 (pfam13384), COG3415 (Transposase ), COG4584 (Transposase ), BH0617 (COG3424)
YpbQ (COG1755), CoAse (cd03426), DAP2 (COG1506), AmiC (COG0860), PG_binding_1 (pfam01471)